3w97_ABCDEFGH
citing 3d-footprint
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structure name
CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H2B N- TERMINAL REGION
reference
Kurumizaka et al. 'FEBS 3 363 2013
source
HOMO SAPIENS
experiment
X-ray (resolution=3.20, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
5gtc_H
5o9g_E
5o9g_F
5o9g_G
5z3u_A
6a5l_d
6buz_H
6c0w_H
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6see_H
6t7a_H
6upk_H
6x0n_f
6x59_H
6y5d_H
6yov_C
7at8_D
7d1z_H
7e8d_H
7eg6_A
7egp_S
7jzv_N
7k5x_H
7k60_H
7k63_H
7nkx_a
7nkx_f
7otq_E
7pet_H
7scy_H
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8h0v_h
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 3w97_A interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger > 3w97_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3w97_C interface=65, kaktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnkktRiiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 3w97_D interface=8, srkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 3w97_E interface=1,3,5, KpHrYrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 3w97_F interface=27, rkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3w97_G interface=27,62, trssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 3w97_H interface= rkesysiyvykvlkqvhpdtgisskaMgimnsfvndiferiageasrlahynkrstitsreIqtavrlllpgelakhavsegtkavtkytsa
3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
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updated Mon Sep 9 20:35:16 2024