7jzv_N : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	7jzv_NOPQnopq 7lyb_ABCDEFGH
redundant complexes	7lyb
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jzv_N interface=28, ksrssraglqfpvgrvhrllrkgnyaeRvgagapvymaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpk

  
  ----RG----       +-----------------------------5x0y_G    
                   !  
  ----RT----       !                             +8u14_G    
                   !              +--------------1 
  ----RG----       !         +---11              +8ox0_C    
                   !         !    !  
  ----RA--RA       !         !    +--------------6a5l_g    
                 -15      +-13  
  ----RT----       !      !  !                   +8smw_G    
                   !      !  !           +-------2 
  ----RA----       !      !  !           !       +1zla_C    
                   !      !  +----------10  
  ----RG----       !      !              !       +8txv_G    
                   !      !              +-------5 
  ----RG----       +-----14                      +8jla_C    
                          !  
  ----RG--RG              !              +-------8kcb_A    
                          !      +-------9 
  --LARG----              !      !       !      +7unc_a    
                          !      !       +------6 
  LC--RT----              !      !              +8hr1_E    
                          +-----12  
  ----RC----                     !           +---6qld_f    
                                 !       +---7 
  ------RA--                     !       !   +---6g0l_D    
                                 +-------8 
  ----RA----                             !         +7xsx_a    
                                         !       +-3 
  LC--------                             +-------4 +8bvw_e    
                                                 ! 
  ----RT----                                     +8grq_A

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updated Wed Dec 18 09:12:51 2024