Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes7jzv_NOPQnopq 7lyb_ABCDEFGH
redundant complexes7lyb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RT----                               +8u14_G    
                       +-------------------1 
  ----RG----           !                   +5x0y_G    
                       !  
  ----RA----           !                    +1zla_C    
                   +--14      +-------------6 
  ----RG----       !   !      !             +8jla_C    
                   !   !  +--11  
  ----RT----       !   !  !   !              +8smw_G    
                   !   !  !   +--------------3 
  ----RG----       !   +-13                  +8ox0_C    
                   !      !  
  ----RA--RA       !      !                  +6a5l_g    
                 -15      +------------------2 
  ----RG----       !                         +8txv_G    
                   !  
  ----RG--RG       !               +-------8kcb_A    
                   !     +---------9 
  --LARG----       !     !         !      +7unc_a    
                   !     !         +------5 
  LC--RT----       !     !                +8hr1_E    
                   !     !  
  ----RC----       +----12             +---6qld_f    
                         !           +-7 
  ------RA--             !     +-----8 +---6g0l_D    
                         !     !     ! 
  LC--------             +----10     +-----8bvw_e    
                               !  
  ----RA----                   !           +7xsx_a    
                               +-----------4 
  ----RT----                               +8grq_A    
                 

home
updated Sun Aug 3 16:34:23 2025