7lyb_G : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH BRCA1-BARD1-UBCH5C
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7lyb_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH
redundant complexes	8upf_C 8u14
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lyb_G interface=32, sakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpkkt

  
  --RT----                                  +8u14_G    
                             +--------------1 
  --RG----                   !              +8ox0_C    
                          +-12  
  --RG----                !  !              +8txv_G    
                          !  +--------------2 
  --RG----                !                 +5x0y_G    
                 +-------13  
  --RT----       !        !                +8smw_G    
                 !        !              +-3 
  --RA----       !        !    +---------6 +1zla_C    
                 !        !    !         ! 
  --RA--RA       !        +---11         +6a5l_g    
                 !             !  
  --RG----     -15             +---------8jla_C    
                 !  
  --RG--RG       !                +------8kcb_A    
                 !        +------10  
  LARG----       !        !       !      +7unc_a    
                 !        !       +------7 
  LCRT----       !        !              +8hr1_E    
                 +-------14  
  --RC----                !          +---6qld_f    
                          !       +--8 
  ----RA--                !       !  +---6g0l_D    
                          +-------9 
  --RA----                        !        +7xsx_a    
                                  !      +-4 
  LC------                        +------5 +8bvw_e    
                                         ! 
  --RT----                               +8grq_A

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updated Wed Dec 18 09:42:58 2024