3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Mon Jan 5 17:02:01 2026

structure name	CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
reference	Kawashima et al. 'J. 139 7568 2017
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5gtc_H 5o9g_E 5o9g_F 5z3u_A 6a5l_d 6a5l_e 6a5l_g 6ir9_e 6iro_A 6nqa_A 6pww_K 6r25_E 6r8y_H 6upk_H 6x0n_f 6yov_C 7at8_D 7d1z_H 7ea8_A 7eg6_A 7egp_S 7jzv_N 7lyb_G 7nkx_a 7nkx_f 7otq_E 7scy_H 7u0g_M 7unc_a 7und_e 7vdt_B 7xsx_a 7xzx_N 7zs9_e 8aag_A 8atf_Q 8bvw_e 8ceo_r 8cww_A 8g57_E 8h0v_h 8he5_a 8jh2_e 8jhf_A 8siy_G 8txv_G 8u14_G 8upf_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gtc_A interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger > 5gtc_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5gtc_C interface=32, rakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5gtc_D interface=2,8, sRkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 5gtc_E interface=2,3,4,26,28, pHRYrpgtvalreirryqkstelliRkLpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 5gtc_F interface=29, rhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5gtc_G interface=31, akaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5gtc_H interface= rkesysiyvykvlkqvhpdtgisskamgimNsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa