| structure name | PRDM9-ALLELE-C ZNF8-13 (PR domain zinc finger protein 9) |
| reference | Patel et al. 'J. 292 15994 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.42, R-factor=0.176) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NSHRRDSHDSNWSVRDSNSHR |
Estimated binding specificities ?
| readout + contact |  |
A | 12 68 0 0 0 0 92 8 0 0 96 20 0 0 0 4 24 0 0 0 C | 12 8 96 96 96 96 0 8 0 4 0 0 96 0 0 4 24 96 96 96 G | 64 12 0 0 0 0 4 72 0 84 0 76 0 96 0 4 24 0 0 0 T | 8 8 0 0 0 0 0 8 96 8 0 0 0 0 96 84 24 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatSGHGRGRGDC--SCHG----DCSANA----WC--SCVG--RGDCSGNA------STHGRG-- L +-----------5v3g_A +--2 --------------------ECSGKGRG--DG--YCKG--RGQA--TC----RASCDCVT-- L ! ! +-------5k5h_A +--------3 +---1 ----------------------------NGKT--WTKG------HTHGRGTGTTACNAKGRG L ! ! +-------1tf3_A +-4 ! ------------------RGSTYGYC----QC--TGSTRGYT-------------------- ! ! +--------------4is1_C +--5 ! --------QA----TCRG--RGYCRT------------------------------------ L ! ! +-----------------------7txc_E --6 ! --------------------NTSTNAVT--QTSTSGKG--RG-------------------- L ! +------------------------6u9q_A ! ------QT--AG--KGRG--RGDCKG------------------------------------ L +---------------------------7n5w_A |
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updated Tue Dec 17 02:38:25 2024