3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Tue Sep 10 09:59:27 2024

structure name	THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3.3, AND H4
reference	Kurumizaka et al. 'Nat 9 1400 2018
source	MUS MUSCULUS
experiment	X-ray (resolution=2.87, R-factor=?)
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex	5gtc_H 5o9g_F 5o9g_G 6a5l_d 6buz_H 6c0w_H 6ftx_B 6g0l_M 6r8y_H 6see_H 6t7a_H 6upk_H 6x0n_f 6x59_H 6y5d_H 7d1z_H 7e8d_H 7jzv_N 7k5x_H 7k60_H 7k63_H 7nkx_f 7pet_H 7scy_H 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8h0v_h 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xm0_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger > 5xm0_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5xm0_C interface=29, aktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5xm0_D interface=9, rgrkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytss > 5xm0_E interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger > 5xm0_F interface=27, rkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5xm0_G interface=28,63, ktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5xm0_H interface= rkesysiyvykvlkqvhpdtgisskamGimnsfvndiferiaseasrlahynkrstitsrevQtavrlllpgelakhavsegtkavtkytss