6j99_D : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH AN H2B- MONOUBIQUITINATED NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6j99_ABCDEFGH 6o96_ABCDEFGH 8du4_ABCDEFGH 8g6g_ABCDEFGH 8g6h_ABCDEFGH
redundant complexes	6o96_D 8du4_H 8g6g_H 8g6h_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6j99_D interface=4, rktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtcyts

  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                         +----9fgq_D    
                   !            +------------3 
  ----RG----       !            !            +----5x0y_G    
                   !          +-5 
  ----RA----       !          ! !                 +1zla_C    
                   !      +---6 +-----------------2 
  ----RG----     -10      !   !                   +8ox0_C    
                   !      !   ! 
  ----RT----       !    +-7   +-------------------8grq_A    
                   !    ! ! 
  ----RT----       !    ! !           +-----------8u14_G    
                   !  +-8 +-----------4 
  --LCRT----       !  ! !             +-----------8hr1_E    
                   !  ! ! 
  ----RA--RA       +--9 !                         +6a5l_g    
                      ! +-------------------------1 
  ----RG----          !                           +8txv_G    
                      ! 
  ----RG----          +--------------------------8jla_C

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updated Sun Aug 3 11:46:58 2025