6j99_D : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH AN H2B- MONOUBIQUITINATED NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6j99_ABCDEFGH 6o96_ABCDEFGH 8du4_ABCDEFGH 8g6g_ABCDEFGH 8g6h_ABCDEFGH
redundant complexes	6o96_D 8du4_H 8g6g_H 8g6h_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6j99_D interface=4, rktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtcyts

  
  RG--------           +-----------------------------7k63_H    
                     +-7 
  RG--------         ! +-----------------------------3x1t_H    
                   +-8 
  --------RC       ! !                         +---6qld_f    
                   ! +-------------------------4 
  --------RA       !                           +---7xsx_a    
                   ! 
  --LC------     --9                             +5mlu_A    
                   !              +--------------2 
  --LT------       !              !              +4z5t_A    
                   !       +------5 
  ----LT--RC       !       !      !                +5xm1_A    
                   !       !      !              +-1 
  --------RT       +-------6      +--------------3 +8g57_E    
                           !                     ! 
  --------RA               !                     +7ea8_A    
                           ! 
  ------KT--   L           +---------------------7cvo_A

home
updated Fri Sep 13 22:07:04 2024