Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HUMAN APC3LOOP 375-381 BOUND TO THE NCP
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes9fgq_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --------RA----             +-----------------------------6g0l_D    
                          +-17  
  --IT----------       +-18  +-----------------------------3wkj_D    
                       !  !  
  ------RG------       !  +-----------------------------5x0y_G    
                       !  
  ------RA------       !                                +1zla_C    
                       !                +---------------2 
  ------RG------       !     +----------7               +8ox0_C    
                       !     !          ! 
  ------RG------       !     !          +---------------8jla_C    
                       !     !  
  ----------KG--       !     !                         +-7nkx_f    
                       !     !     +-------------------4 
  ------RA----RA     -19  +-15     !                   +-6a5l_g    
                       !  !  !     !  
  LA----RG------       !  !  !  +-11                     +7unc_a    
                       !  !  !  !  !      +--------------1 
  ------RT------       !  !  !  !  ! +----6              +8grq_A    
                       !  !  !  !  ! !    ! 
  ------RT------       !  !  !  !  +-9    +--------------7zs9_e    
                       !  !  +-13    ! 
  ------RG------       !  !     !    !                   +7ccr_A    
                       !  !     !    +-------------------3 
  LC----RT------       !  !     !                        +8hr1_E    
                       +-16     !  
  ------RT------          !     +------------------------7kbd_C    
                          !  
  ------RC------          !                         +---7xyf_B    
                          !            +------------5 
  LT----RC------          !        +---8            +---3kwq_E    
                          !        !   ! 
  ------RG------          !     +-10   +----------------6iy2_A    
                          !     !  !  
  ----KT--------   L      !  +-12  +--------------------7cvo_A    
                          !  !  !  
  LT----RC------          +-14  +-----------------------4xzq_E    
                             !  
  QC----RG------             +------------------------7y7i_E    
                     

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updated Wed Dec 18 20:12:52 2024