9fgq_D : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF HUMAN APC3LOOP 375-381 BOUND TO THE NCP
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	9fgq_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9fgq_D interface=1, Rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk

  
  --IT------          +-----------------------------3wkj_D    
                      !  
  --------KG          !                         +---7nkx_f    
                      ! +-----------------------1 
  LA----RG--          ! !                       +---7unc_a    
                   +-10 ! 
  ------RC--       !  ! !                           +---7xyf_B    
                   !  ! !              +------------2 
  LT----RC--       !  ! !          +---3            +---3kwq_E    
                   !  ! !          !   ! 
  ------RG--       !  +-9       +--4   +----------------6iy2_A    
                   !    !       !  ! 
  ----KT----   L   !    !     +-5  +--------------------7cvo_A    
                 -11    !     ! ! 
  ------RG--       !    !   +-6 +-----------------------7ccr_A    
                   !    !   ! ! 
  LT----RC--       !    ! +-7 +------------------------4xzq_E    
                   !    ! ! ! 
  ------RT--       !    +-8 +-------------------------7zs9_e    
                   !      ! 
  QC----RG--       !      +--------------------------7y7i_E    
                   !  
  ------RT--       +-----------------------------7kbd_C

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updated Sat Sep 14 12:50:38 2024