6m4d_C : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURAL MECHANISM OF NUCLEOSOME DYNAMICS GOVERNED BY HUMAN HISTONE VARIANTS H2A.B AND H2A.Z.2.2 (HISTONE H2A.V)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6m4d_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6m4d_C interface=30, avsrsqraglqfpvgrihrhlktrttshgRvgataavysaaileyltaevlelagnaskdlkvkritprhlqlairgdeeldslikatiag

  
  --RA----                               +1zla_C    
                           +-------------3 
  --RA--RA                 !             +6a5l_g    
                         +-5 
  --RG----               ! !              +8txv_G    
                      +--6 +--------------2 
  --RG----            !  !                +8ox0_C    
                      !  ! 
  --RG----         +--7  +---------------8jla_C    
                   !  ! 
  --RT----         !  !                  +8u14_G    
                 +-9  +------------------1 
  --RG----       ! !                     +5x0y_G    
                 ! ! 
  LCRT----     -10 +---------------------8hr1_E    
                 !  
  --RG--RG       !                +------8kcb_A    
                 !    +-----------4 
  ----RA--       +----8           +------6g0l_D    
                      ! 
  --RT----            +------------------8grq_A

home
updated Sun Aug 3 12:15:46 2025