6m4d_C : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURAL MECHANISM OF NUCLEOSOME DYNAMICS GOVERNED BY HUMAN HISTONE VARIANTS H2A.B AND H2A.Z.2.2 (HISTONE H2A.V)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6m4d_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6m4d_C interface=30, avsrsqraglqfpvgrihrhlktrttshgRvgataavysaaileyltaevlelagnaskdlkvkritprhlqlairgdeeldslikatiag

  
  ------RT                                         +1u35_G    
                     +-----------------------------1 
  ------RT         +-5                             +7lyb_G    
                   ! ! 
  ------RA       +-6 +-----------------------------6t7a_C    
                 ! ! 
  RAETRT--       ! +-----------------------------4ne1_p    
                 ! 
  --IT--RA     --7                            +7k78_E    
                 !             +--------------2 
  ------RT       !         +---3              +7lya_E    
                 !         !   ! 
  ------RT       +---------4   +---------------7wlr_E    
                           ! 
  ------RT                 +-------------------7zs9_e

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updated Fri Sep 13 22:35:22 2024