6nj9_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 2-TO-1 COMPLEX
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6nj9_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH
redundant complexes	6nog 6nqa
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6nj9_H interface=4, rktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtcytsa

  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                         +----9fgq_D    
                   !                   +-----4 
  ----RG----       !                   !     +----5x0y_G    
                   !          +--------5 
  ----RA----       !          !        !          +1zla_C    
                 -10       +--6        +----------2 
  ----RG----       !       !  !                   +8ox0_C    
                   !       !  ! 
  ----RT----       !       !  +-------------------8grq_A    
                   !     +-8 
  ----RT----       !     ! !                     +8u14_G    
                   !     ! ! +-------------------3 
  ----RG----       !     ! +-7                   +8jla_C    
                   +-----9   ! 
  --LCRT----             !   +--------------------8hr1_E    
                         ! 
  ----RA--RA             !                       +6a5l_g    
                         +-----------------------1 
  ----RG----                                     +8txv_G

home
updated Sun Aug 3 12:23:18 2025