6nj9_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 2-TO-1 COMPLEX
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6nj9_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH
redundant complexes	6nog 6nqa
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6nj9_H interface=4, rktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtcytsa

  
  RG------           +-----------------------------7k63_H    
                   +-7 
  RG------         ! +-----------------------------3x1t_H    
                 +-8 
  ------RA       ! !                          +--7xsx_a    
                 ! +--------------------------4 
  ------RC       !                            +--6qld_f    
                 ! 
  --LC----       !                               +5mlu_A    
               --9                             +-2 
  --LT--RC       !                             ! ! +5xm1_A    
                 !                     +-------3 +-1 
  ------RT       !                     !       !   +8g57_E    
                 !       +-------------5       ! 
  --LT----       !       !             !       +4z5t_A    
                 +-------6             ! 
  ------RA               !             +-------7ea8_A    
                         ! 
  ----KT--   L           +---------------------7cvo_A

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updated Fri Sep 13 22:42:06 2024