3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF DOT1L-H2BK120UB NUCLEOSOME COMPLEX
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6nn6_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                        +----9fgq_D    
                   !                  +-----2 
  ----RG----       !                  !     +----5x0y_G    
                   !            +-----3 
  ----RA----     -10            !     !          +1zla_C    
                   !          +-6     +----------1 
  ----RG----       !          ! !                +8ox0_C    
                   !  +-------7 ! 
  ----RA--RA       !  !       ! +----------------6a5l_g    
                   !  !       ! 
  ----RG----       !  !       +------------------8jla_C    
                   +--9 
  ----RT----          !              +-----------8u14_G    
                      !     +--------5 
  --LCRT----          !     !        +-----------8hr1_E    
                      +-----8 
  ----RG----                !        +-----------8txv_G    
                            +--------4 
  ----RT----                         +-----------8grq_A

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updated Wed Dec 18 04:45:55 2024