3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF DOT1L-H2BK120UB NUCLEOSOME COMPLEX
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6nn6_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                         +----9fgq_D    
                   !                   +-----3 
  ----RG----       !                   !     +----5x0y_G    
                   !             +-----4 
  ----RA----       !             !     !          +1zla_C    
                 -10      +------6     +----------2 
  ----RG----       !      !      !                +8ox0_C    
                   !      !      ! 
  ----RG----       !      !      +----------------8jla_C    
                   !    +-8 
  ----RA--RA       !    ! !                       +6a5l_g    
                   !    ! !  +--------------------1 
  ----RG----       !    ! +--7                    +8txv_G    
                   +----9    ! 
  ----RT----            !    +--------------------8grq_A    
                        ! 
  ----RT----            !            +-----------8u14_G    
                        +------------5 
  --LCRT----                         +-----------8hr1_E

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updated Sun Aug 3 12:25:39 2025