7d3t_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA (Protein PHOSPHATE STARVATION RESPONSE 2)
reference	Zhang et al. 'Nat 13 1581 2022
source	Oryza sativa subsp. indica
experiment	X-ray (resolution=2.70, R-factor=0.215)
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
multimeric complexes	7d3t_AB 7d3t_CD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7d3t_D interface=2,46,47,50,51, tRmrwtpelherfvdavnllggsekatpkgvlklmkadnltiyhvKShlQKyrtaryrpels
interface signature	RKSQK

Estimated binding specificities ?

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# IC=5.300 IC/col=0.757 n_of_columns=7

specificity:

A |   0   0  96  11  24   9   9
C |   0   0   0   9  24  11  67
G |  96  96   0   9  24   9  11
T |   0   0   0  67  24  67   9

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------NCICNARGRG   L       +-----------------------------4xrm_B    
                           +-3 
  RT----IAQCNAMG--   L     ! +-----------------------------1b72_A    
                         +-4 
  RT--QTVAQTNA----   L   ! !                             +8osb_E    
                         ! !            +----------------1 
  RT----VTKGNA--KA   L --5 +------------2                +2lkx_A    
                         !              ! 
  RC----IAQCNAYC--   L   !              +----------------3rkq_B    
                         ! 
  --NG--NA--------   L   +-----------------------------2kdz_A

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updated Wed Dec 18 08:29:49 2024