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legend  pdf

structure nameCRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA
(Protein PHOSPHATE STARVATION RESPONSE 2)
referenceZhang et al. 'Nat 13 1581 2022
sourceOryza sativa subsp. indica
experimentX-ray (resolution=2.70, R-factor=0.215)
structural superfamilyHomeodomain-like;
sequence familyMyblike DNAbinding domain;
multimeric complexes7d3t_AB 7d3t_CD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKSQK

Estimated binding specificities ?

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# IC=6.464 IC/col=0.923 n_of_columns=7 specificity:   
A |   8  69  11  87   0   0   0
C |  11   8   8   9   0  96  96
G |  69   8   8   0   0   0   0
T |   8  11  69   0  96   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ------NCICNARGRG   L     +-----------------------------4xrm_B    
                           ! 
  RT--QTVAQTNA----   L     !                             +8osb_E    
                         +-4                          +--1 
  RT----VTKGNA--KA   L   ! !                +---------2  +2lkx_A    
                         ! !                !         ! 
  RT----IAQCNAMG--   L --5 +----------------3         +--1b72_A    
                         !                  ! 
  RC----IAQCNAYC--   L   !                  +------------3rkq_B    
                         ! 
  --NG--NA--------   L   +-----------------------------2kdz_A    
                       

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updated Sat Sep 14 02:10:02 2024