3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameNUCLEOSOME FROM A DIMERIC PRC2 BOUND TO A NUCLEOSOME
(HISTONE H3)
sourceXENOPUS LAEVIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6r1t_ABCDEFGH 7ktq_ABCDEFGH 7xd0_ABCDEFGHKL
redundant complexes6r1t 7xd0
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--RT----       +-----------------------------8grq_A    
                   !  
  RG--------       !                              +8jh2_e    
                   !           +------------------3 
  RGLCRT----       !         +-8                  +8hr1_E    
                   !         ! ! 
  ----RG----     -11         ! +-------------------8jla_C    
                   !      +--9 
  ----RA----       !      !  !                   +1zla_C    
                   !      !  !    +--------------1 
  ----RG----       !      !  +----7              +8ox0_C    
                   !      !       ! 
  ----RG----       !      !       +--------------5x0y_G    
                   +-----10  
  ----RA----              !                   +--7xsx_a    
                          !               +---4 
  ------RA--              !         +-----5   +--6g0l_D    
                          !         !     ! 
  ----RT----              +---------6     +------8u14_G    
                                    ! 
  ----RG----                        !            +8txv_G    
                                    +------------2 
  ----RA--RA                                     +6a5l_g    
                 

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updated Sun Aug 3 16:54:28 2025