7yqk_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF GAMMAH2AXK15UB-H4K20ME2 NUCLEOSOME BOUND TO 53BP1
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7yqk_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7yqk_E interface=5,48, kkphRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger

  
  RG--------                                     +8jh2_e    
                                 +---------------2 
  RG--RT----            +--------6               +8grq_A    
                        !        ! 
  RGLCRT----            !        +---------------8hr1_E    
                        !  
  ----RA----            !                  +------8rbx_M    
                   +---10      +-----------4 
  ------RA--       !    ! +----7           +------6g0l_D    
                   !    ! !    ! 
  ----RG----       !    ! !    +------------------8jla_C    
                   !    ! ! 
  ----RA----       !    +-9                       +1zla_C    
                   !      !   +-------------------3 
  ----RG----     -11      !   !                   +8ox0_C    
                   !      +---8 
  ----RG----       !          !                   +8txv_G    
                   !          !    +--------------1 
  ----RG----       !          +----5              +5x0y_G    
                   !               ! 
  ----RA--RA       !               +--------------6a5l_g    
                   !  
  ----RT----       +-----------------------------8u14_G

home
updated Wed Dec 18 14:34:58 2024