7yqk_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF GAMMAH2AXK15UB-H4K20ME2 NUCLEOSOME BOUND TO 53BP1
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7yqk_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7yqk_E interface=5, kkphRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger

  
  HTRG------RT                        +8g57_E    
                              +-------2 
  --RT--RG----                !       +6pww_K    
                       +------6 
  HTRA----LTRC         !      !       +5xm1_A    
                       !      +-------1 
  --RA----LT--       +-8              +4z5t_A    
                     ! ! 
  --RGYA--LC--       ! !             +5mlu_A    
                     ! +-------------4 
  --RG--RC----     --9               ! +6fq8_A    
                     !               +-3 
  --RG--------       !                 +6y5d_Q    
                     ! 
  --RT------RA       !       +-------7ea8_A    
                     +-------7 
  ----------RA               !    +--7xsx_a    
                             +----5 
  ----------RC                    +--6qld_f

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updated Wed Dec 20 00:05:16 2023