8ap1_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH TWO GTP MOLECULES POISED FOR DE NOVO INITIATION (IC2)
experiment	NMR
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
sequence family	Ribosomal RNA adenine dimethylase;
multimeric complexes	6ymv_AB 6ymw_AB
reference complex	6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ap1_B interface=15,102,104,143,145,147,148,334,335, svpipgikdisklkFfygfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrdpYdWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdmYQtehs
interface signature	FYWELMQYQ

Estimated binding specificities ?

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# IC=3.647 IC/col=0.135 n_of_columns=27

specificity:

A |  24  24  24  21  24  24  24  24  24  31  15   0  24  96   4  24  24  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  21  24  24  24  24  24  21  51  96  24   0  81  24  24  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  21  24  24  24  24  24  23  15   0  24   0   4  24  24  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  33  24  24  24  24  24  21  15   0  24   0   7  24  24  24  24  24  24  24  24  24  24  24  24

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updated Tue Dec 19 02:16:02 2023