8atv_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 5-MER RNA, PPPGPGPAPAPA (IC5)
experiment	NMR
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
sequence family	Ribosomal RNA adenine dimethylase;
multimeric complexes	6ymv_AB 6ymw_AB
reference complex	6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8atv_B interface=53,100,102,103,104,143,145,147,148,333,334, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMY
interface signature	YDYDWELMQMY

Estimated binding specificities ?

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# IC=3.430 IC/col=0.127 n_of_columns=27

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24   0  20  96   7  49  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  24  24  24  96  20   0  74  17  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  24  24  24   0  34   0   8  15  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  24  24  24   0  22   0   7  15  24  24  24  24  24  24  24  24  24  24

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updated Tue Dec 19 02:16:24 2023