8c5s_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 7-MER RNA, PPPGPGPUPAPAPAPU (IC7)
experiment	NMR
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
sequence family	Ribosomal RNA adenine dimethylase;
multimeric complexes	6ymv_AB 6ymw_AB
reference complex	6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8c5s_B interface=17,100,102,103,104,143,145,147,148,335, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdmyQt
interface signature	YDYDWELMQQ

Estimated binding specificities ?

contact

# IC=4.507 IC/col=0.161 n_of_columns=28

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  31  24   0   0  96   8  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  24  24  24  21  24  96   0   0  70  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  24  24  24  21  24   0  96   0  10  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  24  24  24  23  24   0   0   0   8  24  24  24  24  24  24  24  24  24  24

scan!

home
updated Tue Dec 19 02:32:10 2023