8grq_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF BRCA1/BARD1 BOUND TO H2AK127-UBCH5C-UB NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8grq_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8grq_H interface=3, rsRkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa

  
  RG------           +-----------------------------7k63_H    
                   +-7 
  RG------         ! +-----------------------------3x1t_H    
                 +-8 
  ------RC       ! !                         +---6qld_f    
                 ! +-------------------------4 
  ------RA       !                           +---7xsx_a    
                 ! 
  --LC----     --9                             +5mlu_A    
                 !              +--------------3 
  --LT----       !              !              +4z5t_A    
                 !       +------5 
  --LT--RC       !       !      !                +5xm1_A    
                 !       !      !              +-1 
  ------RT       +-------6      +--------------2 +8g57_E    
                         !                     ! 
  ------RA               !                     +7ea8_A    
                         ! 
  ----KT--   L           +---------------------7cvo_A

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updated Sat Sep 14 10:13:19 2024