8grq_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF BRCA1/BARD1 BOUND TO H2AK127-UBCH5C-UB NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8grq_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8grq_H interface=3, rsRkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa

  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                        +----9fgq_D    
                   !           +------------3 
  ----RG----       !       +---6            +----5x0y_G    
                 -10       !   ! 
  ----RG----       !    +--8   +-----------------8jla_C    
                   !    !  ! 
  ----RA--RA       !    !  +---------------------6a5l_g    
                   !    ! 
  ----RT----       !    !                        +8u14_G    
                   +----9            +-----------1 
  ----RA----            !       +----4           +1zla_C    
                        !       !    ! 
  --LCRT----            !     +-5    +-----------8hr1_E    
                        !     ! ! 
  ----RG----            !     ! !                +8txv_G    
                        +-----7 +----------------2 
  ----RG----                  !                  +8ox0_C    
                              ! 
  ----RT----                  +------------------8grq_A

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updated Wed Dec 18 17:22:51 2024