Interface of input file ?

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3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Dec 16 10:48:14 2024

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168 AND UBCH5C WITH BACKSIDE UBIQUITIN (UBCH5C CHEMICALLY CONJUGATED TO HISTONE H2A) (CLASS 1)
experiment	NMR
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	5gtc_H 6a5l_d 6c0w_H 6ftx_B 6pww_K 6r25_E 6r8y_H 6see_H 6t7a_H 6upk_H 6x0n_f 6x59_H 6y5d_H 6yov_C 7at8_D 7d1z_H 7e8d_H 7eg6_A 7egp_S 7k5x_H 7k60_H 7k63_H 7nkx_a 7nkx_f 7otq_E 7pet_H 7scy_H 7u0g_M 7unc_a 7und_e 7vdt_B 7xcr_F 7xzx_N 7xzz_N 7zs9_e 8a3y_a 8aag_A 8atf_Q 8bvw_e 8byq_e 8ceo_r 8cww_A 8g57_E 8h0v_h 8he5_a 8jh2_e 8jhf_A 8siy_G 8smw_G 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sn9_A interface=3,4, kpHRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 8sn9_B interface= kvLRdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 8sn9_C interface= saKActrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 8sn9_D interface=4, krsRkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts > 8sn9_E interface=4, kphRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 8sn9_F interface= vlrDniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 8sn9_G interface= sakActrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpkk > 8sn9_H interface= rsrKesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts