interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT
(HISTONE H2B)
referenceRichmond et al. Nature 389 251 1997
sourceXENOPUS LAEVIS
experimentX-ray (resolution=2.80, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1aoi_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--------                     +-----------------------------1p3i_D    
                               +-1 
  RG--------                 +-2 +-----------------------------3x1t_H    
                             ! ! 
  ------RART               +-3 +-----------------------------3x1t_G    
                           ! ! 
  ------RA--             +-4 +-----------------------------1kx5_G    
                         ! ! 
  ------RT--           +-5 +-----------------------------4x23_O    
                       ! ! 
  ----RT----         +-6 +-----------------------------4jjn_F    
                     ! ! 
  --LT--RC--       +-7 +-----------------------------1p3i_A    
                   ! ! 
  ------KG--     --8 +-----------------------------1jfi_A    
                   ! 
  ------RA--       +-----------------------------1f66_G    
                 

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updated Fri Sep 13 15:23:25 2024