interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
(PROTEIN HISTONE H2A)
referenceHanson et al.
sourceGALLUS GALLUS
experimentX-ray (resolution=2.50, R-factor=0.219)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1eqz_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG----       +-----------------------------5x0y_G    
                 !  
  --RT----       !                               +8u14_G    
                 !                             +-1 
  --RA----       !         +-------------------3 +1zla_C    
                 !         !                   ! 
  --RG----       !         !                   +8ox0_C    
               -11         ! 
  --RG----       !      +--9                   +8txv_G    
                 !      !  !  +----------------4 
  --RG----       !      !  !  !                +8jla_C    
                 !      !  +--8 
  --RT----       !      !     !                +8smw_G    
                 !      !     !   +------------5 
  --RA--RA       +-----10     +---6            +6a5l_g    
                        !         ! 
  ----RA--              !         +------------6g0l_D    
                        !  
  --RA----              !                      +7xsx_a    
                        !       +--------------2 
  --RT----              +-------7              +8grq_A    
                                ! 
  LCRT----                      +--------------8hr1_E    
               

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updated Sun Aug 3 05:28:55 2025