Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168 AND UBCH5C~UB (UBCH5C CHEMICALLY CONJUGATED TO HISTONE H2A. NO DENSITY FOR UB.) (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8smw_ABCDEFGH 8smx_ABCDEFGH 8smy_ABCDEFGH 8smz_ABCDEFGH 8sn0_ABCDEFGH 8sn1_ABCDEFGH 8sn2_ABCDEFGH 8sn6_ABCDEFGH 8sn7_ABCDEFGH 8sn9_ABCDEFGH 8sna_ABCDEFGH
redundant complexes8sn9_G 8smx 8smy 8smz 8sn0 8sn1 8sn2 8sn3 8sn4 8sn5 8sn6 8sn7 8sn8 8sna
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RG------             +-----------------------------8ox0_C    
                          +-19  
  ------RG------          !  +-----------------------------5x0y_G    
                          !  
  ------RA------          !                                      +1zla_C    
                          !                +---------------------3 
  ------RA----RA          !                !                     +6a5l_g    
                          !           +---12  
  KG----RT------          !           !    !                      +7kbd_C    
                          !           !    +----------------------1 
  ------RG------          !           !                           +8jla_C    
                          !           !  
  ------RC------          !           !                 +---------7on1_c    
                          !           !         +-------7 
  --LC--RT------          !           !         !       +---------8hr1_E    
                          !        +-15         !  
  ----------KG--          !        !  !  +-----10             +---7nkx_f    
                          !        !  !  !      ! +-----------5 
  --LA--RG------       +-20        !  !  !      ! !           +---7unc_a    
                       !  !        !  !  !      +-8 
  ------RG------       !  !        !  !  !        !               +7ccr_A    
                       !  !        !  !  !        +---------------2 
  ------RT------       !  !        !  !  !                        +8grq_A    
                       !  !        !  +-14  
  ------RC------       !  !        !     !                      +---7xyf_B    
                       !  !     +-16     !         +------------4 
  --IT----------       !  !     !  !     !     +---9            +---3wkj_D    
                       !  !     !  !     !     !   ! 
  --LT--RC------       !  !     !  !     !  +-11   +----------------3kwq_E    
                       !  !     !  !     !  !  !  
  ------RG------     -21  !     !  !     +-13  +--------------------6iy2_A    
                       !  !  +-17  !        !  
  ----KT--------   L   !  !  !  !  !        !                  +----7cvo_A    
                       !  !  !  !  !        +------------------6 
  --------RA----       !  !  !  !  !                           +----6g0l_D    
                       !  +-18  !  !  
  --LT--RC------       !     !  !  +---------------------------4xzq_E    
                       !     !  !  
  ------RT------       !     !  +----------------------------7zs9_e    
                       !     !  
  ------RG------       !     +----------------------------7y7i_E    
                       !  
  ------RT------       +-----------------------------5z23_C    
                     

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updated Wed Dec 18 19:29:42 2024