Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168 AND UBCH5C~UB (UBCH5C CHEMICALLY CONJUGATED TO HISTONE H2A. NO DENSITY FOR UB.) (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8smw_ABCDEFGH 8smx_ABCDEFGH 8smy_ABCDEFGH 8smz_ABCDEFGH 8sn0_ABCDEFGH 8sn1_ABCDEFGH 8sn2_ABCDEFGH 8sn6_ABCDEFGH 8sn7_ABCDEFGH 8sn9_ABCDEFGH 8sna_ABCDEFGH
redundant complexes8sn9_G 8smx 8smy 8smz 8sn0 8sn1 8sn2 8sn3 8sn4 8sn5 8sn6 8sn7 8sn8 8sna
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA------                                    +1zla_C    
                                     +--------------4 
  ------RG------                +---10              +8ox0_C    
                                !    !  
  ------RA----RA          +----12    +---------------6a5l_g    
                          !     !  
  ------RG------       +-16     +--------------------5x0y_G    
                       !  !  
  KG----RT------       !  !                          +7kbd_C    
                       !  +--------------------------1 
  ------RG------       !                             +8jla_C    
                       !  
  ------RT------       !              +------------------------5z23_C    
                       !              !  
  ------RC------       !              !     +-------------------7on1_c    
                       !              !  +-11  
  ----------KG--       !              !  !  !               +---7nkx_f    
                       !           +-15  !  +---------------5 
  --LA--RG------       !           !  !  !                  +---7unc_a    
                       !           !  !  !  
  ------RC------       !           !  !  !                    +----7xyf_B    
                       !           !  !  !                  +-6 
  ----KT--------   L -21           !  +-14          +-------7 +----7cvo_A    
                       !           !     !          !       ! 
  --LC--RT------       !           !     !  +-------8       +-----8hr1_E    
                       !           !     !  !       ! 
  --IT----------       !        +-17     !  !       !             +3wkj_D    
                       !        !  !     !  !       +-------------2 
  --------RA----       !        !  !     +-13                     +6g0l_D    
                       !        !  !        !  
  ------RG------       !        !  !        !                     +7ccr_A    
                       !        !  !        !      +--------------3 
  ------RT------       !     +-18  !        +------9              +8grq_A    
                       !     !  !  !               ! 
  --LT--RC------       !     !  !  !               +--------------3kwq_E    
                       !     !  !  !  
  ------RG------       !  +-19  !  +---------------------------6iy2_A    
                       !  !  !  !  
  --LT--RC------       !  !  !  +---------------------------4xzq_E    
                       +-20  !  
  ------RT------          !  +----------------------------7zs9_e    
                          !  
  ------RG------          +----------------------------7y7i_E    
                     

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updated Mon Aug 4 02:11:15 2025