Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168 AND UBCH5C~UB (UBCH5C CHEMICALLY CONJUGATED TO HISTONE H2A. NO DENSITY FOR UB.) (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8smw_ABCDEFGH 8smx_ABCDEFGH 8smy_ABCDEFGH 8smz_ABCDEFGH 8sn0_ABCDEFGH 8sn1_ABCDEFGH 8sn2_ABCDEFGH 8sn6_ABCDEFGH 8sn7_ABCDEFGH 8sn9_ABCDEFGH 8sna_ABCDEFGH
redundant complexes8sn9_G 8smx 8smy 8smz 8sn0 8sn1 8sn2 8sn3 8sn4 8sn5 8sn6 8sn7 8sn8 8sna
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  KG----RT--             +-----------------------------7kbd_C    
                         !  
  --------KG             !                           +---7nkx_f    
                         !  +------------------------2 
  --LA--RG--             !  !                        +---7unc_a    
                      +-11  !  
  ------RC--          !  !  !                             +---7xyf_B    
                      !  !  !                +------------1 
  --IT------          !  !  !            +---3            +---3wkj_D    
                      !  !  !            !   ! 
  ----KT----   L      !  !  !         +--4   +----------------7cvo_A    
                      !  +-10         !  ! 
  --LT--RC--          !     !       +-5  +--------------------3kwq_E    
                      !     !       ! ! 
  ------RG--       +-12     !     +-6 +-----------------------6iy2_A    
                   !  !     !     ! ! 
  ------RG--       !  !     !   +-7 +------------------------7ccr_A    
                   !  !     !   ! ! 
  --LT--RC--       !  !     ! +-8 +-------------------------4xzq_E    
                   !  !     ! ! ! 
  ------RT--     -13  !     +-9 +--------------------------7zs9_e    
                   !  !       ! 
  ------RG--       !  !       +--------------------------7y7i_E    
                   !  !  
  ------RT--       !  +-----------------------------5z23_C    
                   !  
  ------RC--       +-----------------------------7on1_c    
                 

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updated Sat Sep 14 12:02:05 2024