1jfi_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX (TRANSCRIPTION REGULATOR NC2 BETA CHAIN)
reference	New York SGX Research Center for Structural Genomics (NYSGXRC)
source	HOMO SAPIENS
experiment	X-ray (resolution=2.62, R-factor=0.236)
structural superfamily	Histone-fold;
sequence family	Histonelike transcription factor CBF/;
multimeric complexes	1jfi_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jfi_B interface=94, ddltipraainkmiketlpnvrvandarelvvncctefihlisseaneicnksekktispehviqaleslgfgsyisevkevlqecktvalkrRkassrlenlgipeeellrqqqelfakarqqqaelaqqewlq

  
  RAAANA------RT              +------------1jfi_B    
                            +-7 
  --------RA----            ! !            +7xsx_a    
                       +----8 +------------1 
  --------RC----       !    !              +7ux9_E    
                       !    ! 
  --------RT----       !    +--------------6px1_A    
                       !  
  --------RA----       !                     +7e9c_F    
                       !      +--------------2 
  --------RG----     -11      !              +7e9c_G    
                       !      ! 
  --------RG----       !    +-9              +8txv_G    
                       !    ! !      +-------3 
  --------RG----       !    ! !      !       +8upf_G    
                       !    ! +------6 
  --------RARA--       +---10        !       +6a5l_g    
                            !        +-------4 
  --------RC----            !                +7yqk_C    
                            !  
  --------RT----            !             +8u14_G    
                            +-------------5 
  ----HGRTRG----                          +8rbx_V

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updated Sat Jan 10 04:42:08 2026