1jfi_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX (TRANSCRIPTION REGULATOR NC2 BETA CHAIN)
reference	New York SGX Research Center for Structural Genomics (NYSGXRC)
source	HOMO SAPIENS
experiment	X-ray (resolution=2.62, R-factor=0.236)
structural superfamily	Histone-fold;
sequence family	Histonelike transcription factor CBF/;
multimeric complexes	1jfi_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jfi_B interface=94, ddltipraainkmiketlpnvrvandarelvvncctefihlisseaneicnksekktispehviqaleslgfgsyisevkevlqecktvalkrRkassrlenlgipeeellrqqqelfakarqqqaelaqqewlq

  
  RAAANA--RT         +--------------1jfi_B    
                   +-3 
  ------RA--       ! !           +--7xsx_a    
                   ! +-----------2 
  ------RT--     --4             +--8u14_G    
                   ! 
  ------RG--       !               +7e9c_G    
                   +---------------1 
  ------RG--                       +8txv_G

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updated Fri Sep 13 15:42:26 2024