1nzb_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF WILD TYPE CRE RECOMBINASE-LOXP SYNAPSE (Cre recombinase)
reference	Meyer et al. 'Nucleic 31 5449 2003
source	Enterobacteria phage P1
experiment	X-ray (resolution=3.10, R-factor=0.212)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
sequence family	Phage integrase family;
multimeric complexes	1kbu_AB 1ma7_AB 1nzb_AB 1pvp_AB 1pvq_AB 1pvr_AB 1xo0_AB 2hof_AB 2hoi_GH 3c28_AB 3c29_AB 4crx_AB 5crx_AB 7rhx_AB 7rhz_AB
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1nzb_B interface=21,22,24,25,28,67,68,71,75,182,222,225,238,240,243,263,298,300, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirnldsetgamvrlled
interface signature	HTKMSKTQQKRKSRERNN

Estimated binding specificities ?

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# IC=12.361 IC/col=0.687 n_of_columns=18

specificity:

A |  10  96  24  24  70   0  96   0  96   6   0  75  24  24  24  24  80   6
C |   1   0  24  24   5   0   0   0   0  85   0  10  24  24  24  24   5  10
G |   0   0  24  24  10   0   0   0   0   5  96   5  24  24  24  24   6   5
T |  85   0  24  24  11  96   0  96   0   0   0   6  24  24  24  24   5  75

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updated Thu Jan 8 18:31:59 2026