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legend  pdf

structure namePEPTIDE TRAPPED HOLLIDAY JUNCTION INTERMEDIATE IN CRE-LOXP RECOMBINATION
(Recombinase CRE)
referenceVan Duyne et al. J.Biol.Chem. 280 8290 2005
sourceEnterobacteria phage P1
experimentX-ray (resolution=2.80, R-factor=0.200)
structural superfamilyDNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
sequence familyPhage integrase family;
multimeric complexes1kbu_AB 1ma7_AB 1nzb_AB 1pvp_AB 1pvq_AB 1pvr_AB 1xo0_AB 2hof_AB 2hoi_GH 3c28_AB 3c29_AB 4crx_AB 5crx_AB 7rhx_AB 7rhz_AB
reference complex7rhx_G
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHTMQQKRKRER

Estimated binding specificities ?

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# IC=10.669 IC/col=0.762 n_of_columns=14 specificity:   
A |  11   0  96   0  96   0   0  24  24  24  24  11  69   0
C |   9   0   0   0   0  96   0  24  24  24  24   9   9   0
G |   9   0   0   0   0   0  96  24  24  24  24   9   9   0
T |  67  96   0  96   0   0   0  24  24  24  24  67   9  96
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updated Thu Jan 8 19:27:04 2026