| structure name | CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER (Hepatocyte nuclear factor 6) |
| reference | Nishihira et al. Structure 15 75 2007 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.00, R-factor=0.247) |
| structural superfamily | lambda repressor-like DNA-binding domains;Homeodomain-like; |
| sequence family | CUT domain; Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SQTSDRNMNRR |
Estimated binding specificities ?
readout + contact |  |
A | 76 0 0 0 96 38 0 96 C | 1 0 0 96 0 20 0 0 G | 19 96 0 0 0 19 0 0 T | 0 0 96 0 0 19 96 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: HNF-6ALPHA | ||
| CCAAT | PubMed | 2d5v_B(3.07e-03) |
Dendrogram of similar interfaces ?
matrix format----------RT--QTVAQTNA---- L +8osb_E +--1 ----------RA----IAQTNA---- L +----4 +5ego_B ! ! ----------RT----IAQCNAMG-- L +-----5 +--1b72_A ! ! ----------RT----VTKGNA--KA L ! ! +2lkx_A +--6 +------3 ----------RT----NT--NAIARG L ! ! +1b72_B ! ! ----------RC----IAQCNAYC-- L +---------7 +-------------3rkq_B ! ! ----------------NCICNARGRG L ! ! +4xrm_B --8 +----------------2 ------------RT--NT--NAIARG L ! +4cyc_B ! SGQATGCARG---------------- L +--------------------------8g87_X |
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updated Sat Jan 10 05:10:50 2026