| structure name | CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER (Hepatocyte nuclear factor 6) |
| reference | Nishihira et al. Structure 15 75 2007 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.00, R-factor=0.247) |
| structural superfamily | lambda repressor-like DNA-binding domains;Homeodomain-like; |
| sequence family | CUT domain; Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SQTSDRNMNRR |
Estimated binding specificities ?
| readout + contact |  |
A | 9 21 0 0 0 96 59 0 96 C | 2 9 0 0 96 0 19 0 0 G | 9 57 96 0 0 0 9 0 0 T | 76 9 0 96 0 0 9 96 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: HNF-6ALPHA | ||
| CCAAT | PubMed | 2d5v_B(3.07e-03) |
Dendrogram of similar interfaces ?
matrix format----------RTQTVAQTNA---- L +8osb_E +-1 ----------RT--VTKGNA--KA L +---------2 +2lkx_A ! ! ----------RT--IAQCNAMG-- L +----3 +-1b72_A ! ! --------------NCICNARGRG L +-------4 +-----------4xrm_B ! ! ----------RC--IAQCNAYC-- L --5 +----------------3rkq_B ! SGQATGCARG-------------- L +------------------------8g87_X |
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updated Fri Sep 13 16:14:14 2024