| structure name | CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER (Hepatocyte nuclear factor 6) |
| reference | Nishihira et al. Structure 15 75 2007 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.00, R-factor=0.247) |
| structural superfamily | lambda repressor-like DNA-binding domains;Homeodomain-like; |
| sequence family | CUT domain; Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SQTSDRNMNRR |
Estimated binding specificities ?
readout + contact |  |
A | 0 78 16 0 0 96 6 10 C | 0 6 14 0 0 0 78 10 G | 0 6 14 0 96 0 6 10 T | 96 6 52 96 0 0 6 66scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: HNF-6ALPHA | ||
| CCAAT | PubMed | 2d5v_B(3.07e-03) |
Dendrogram of similar interfaces ?
matrix format----------RTQTVAQTNA---- L +8osb_E +--------------1 ----------RT--VTKGNA--KA L +----2 +2lkx_A ! ! ----------RT--IAQCNAMG-- L +--3 +--------------1b72_A ! ! --------------NCICNARGRG L +-4 +-------------------4xrm_B ! ! ----------RC--IAQCNAYC-- L --5 +----------------------3rkq_B ! SGQATGCARG-------------- L +------------------------8g87_X |
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updated Tue Dec 17 22:39:47 2024