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structure nameSEPARATION-OF-FUNCTION MUTANTS UNRAVEL THE DUAL REACTION MODE OF HUMAN 8-OXOGUANINE DNA GLYCOSYLASE
(N-GLYCOSYLASEDNA LYASE)
referenceForstrom et al. Structure 19 117 2011
sourceHOMO SAPIENS
experimentX-ray (resolution=1.55, R-factor=0.231)
structural superfamilyDNA-glycosylase;TATA-box binding protein-like;
sequence family8oxoguanine DNA glycosylase, Nterminal dom; HhHGPD superfamily base excision DNA repair;
redundant complexes1ebm_A 1fn7_A 1hu0_A 1lwv_A 1lww_A 1lwy_A 1m3q_A 1n39_A 1n3a_A 1n3c_A 1yqk_A 1yql_A 1yqm_A 1yqr_A 2i5w_A 2nob_A 2noe_A 2nof_A 2noh_A 2noi_A 2nol_A 2noz_A 3ih7_A 3ktu_A 6w0m_A 6w0r_A 6w13_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --NCNANARC----YGRC--------                              +---2xhi_A    
                                                     +----3 
  --NG--RG------FGRC--------                       +-4    +---4ejy_A    
                                                   ! ! 
  --LG------------KG--------              +--------6 +--------3cw7_C    
                                          !        ! 
  --QTLAHGAT--------KT------              !        +----------3s6i_A    
                                        +-8 
  QGKGLGSGAG--SC--LTKC------            ! !          +--------4b21_A    
                                        ! !      +---5 
  --QG--QG--YC--------------   L        ! !      !   +--------7ef9_A    
                                        ! +------7 
  ----------YG--------ACCTRG       +----9        !            +5kn8_A    
                                   !    !        +------------1 
  --QG--RG--YC--------------       !    !                     +6u7t_A    
                                   !    ! 
  NGRGTG----LG----LC--------     -10    !                     +6vjw_A    
                                   !    +---------------------2 
  NGRGTG----LG----LCRG------       !                          +7kz0_A    
                                   !  
  --QGCGTA------------------       +--------------------------1orn_A    
                                 

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updated Fri Sep 13 16:47:43 2024