3c28_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE PRODUCT SYNAPSE COMPLEX (Recombinase cre)
reference	Van Duyne et al. 'To ? ? ?
source	Bacteriophage P1
experiment	X-ray (resolution=2.60, R-factor=0.228)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
sequence family	Phage integrase family;
multimeric complexes	1kbu_AB 1ma7_AB 1nzb_AB 1pvp_AB 1pvq_AB 1pvr_AB 1xo0_AB 2hof_AB 2hoi_GH 3c28_AB 3c29_AB 4crx_AB 5crx_AB 7rhx_AB 7rhz_AB
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3c28_B interface=21,22,25,28,67,68,71,75,182,222,224,225,238,240,243,263,298,300, sdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirgmvrlled
interface signature	HTMSKTQQKRRKSRERNN

Estimated binding specificities ?

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# IC=12.440 IC/col=0.732 n_of_columns=17

specificity:

A |  81  13  90  24  24  24  11   0   0   0  96   0  85  73  24  24   0
C |   5   5   0  24  24  24   5  96   0   0   0   0   0   5  24  24   0
G |   5  11   5  24  24  24   7   0  96   0   0   0  11   7  24  24   0
T |   5  67   1  24  24  24  73   0   0  96   0  96   0  11  24  24  96

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updated Thu Jan 8 21:15:21 2026