3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Mon Jan 5 07:28:59 2026

structure name	CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H3.1 N- TERMINAL REGION
reference	Kurumizaka et al. 'FEBS 3 363 2013
source	HOMO SAPIENS
experiment	X-ray (resolution=3.42, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5gtc_H 5o9g_F 6a5l_d 6a5l_g 6r8y_H 6upk_H 6x0n_f 7ccr_A 7d1z_H 7jzv_N 7lyb_G 7nkx_f 7scy_H 7u0g_M 7vdt_B 7xzx_N 8h0v_h 8txv_G 8u14_G 8upf_G 8wg5_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3w98_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger > 3w98_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygf > 3w98_C interface=30,65, kaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 3w98_D interface=1,10, KrsrkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 3w98_E interface=3,4,5,29, kpHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 3w98_F interface= rkVLRdniqgitkpairrlarrggvkriSgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3w98_G interface=28,63, ktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 3w98_H interface= rkesysiyvykvlkqvhpdtgisskamGimnsfvndiferiageasrlahynkrstitsreiQtavrlllpgelakhavsegtkavtkyts