Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4x23_ABCDEFG 4x23_KLMNOPQ 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6jxd_ABCDEFGH 6ke9_ABCDEFGH 6l9h_ABCDEFGH 6le9_ABCDEFGH 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7xd1_ABCDEFGH 8ieg_CDEFGHKL 8wg5_ABCDEFGH
redundant complexes6ipu_A 7ccq_A 8ieg_K 4x23 6iq4 6jxd 6ke9 6l9h 6le9 7ccr 7xd1 8ott
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--------RT------                +-----------------------------8grq_A    
                                   +-16  
  HARA----LT--RC------          +-17  +-----------------------------3kwq_E    
                                !  !  
  --RG--------RG------          !  +-----------------------------6iy2_A    
                                !  
  --RT----LA--RG------          !                             +7unc_a    
                                !               +-------------2 
  --RG----LC--RT------          !        +------9             +8hr1_E    
                                !        !      ! 
  --RT--RG------------          !        !      +--------------6pww_K    
                                !        !  
  --RG--------RT------          !        !                 +---------7zs9_e    
                                !        !             +---7 
  ------------RG------       +-18        !             !   +---------5x0y_G    
                             !  !        !        +----8 
  ----------------KG--       !  !        !        !    !              +7nkx_f    
                             !  !  +----14        !    !            +-3 
  ------------RA------       !  !  !     !     +-11    +------------4 +1zla_C    
                             !  !  !     !     !  !                 ! 
  ------------RG------       !  !  !     !     !  !                 +8jla_C    
                             !  !  !     !  +-12  !  
  HGRGYG--QC--RG------       !  !  !     !  !  !  +------------------7y7i_E    
                             !  !  !     !  !  !  
  --RCYA------RG------       !  !  !     !  !  !         +--------7ccr_A    
                             !  !  !     !  !  +---------6 
  --------------RA----     -19  +-15     +-13            +--------6g0l_D    
                             !     !        !  
  ------------RC------       !     !        !                +--7xyf_B    
                             !     !        !  +-------------5 
  ------------RG------       !     !        !  !             +--8ox0_C    
                             !     !        +-10  
  ------------RT------       !     !           !                +7kbd_C    
                             !     !           +----------------1 
  ------------RA----RA       !     !                            +6a5l_g    
                             !     !  
  ----------IT--------       !     +---------------------------3wkj_D    
                             !  
  HARAYT--LT--RC------       +-----------------------------4xzq_E    
                           

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updated Wed Dec 18 19:56:26 2024