Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4x23_ABCDEFG 4x23_KLMNOPQ 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6jxd_ABCDEFGH 6ke9_ABCDEFGH 6l9h_ABCDEFGH 6le9_ABCDEFGH 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7xd1_ABCDEFGH 8ieg_CDEFGHKL 8wg5_ABCDEFGH
redundant complexes6ipu_A 7ccq_A 8ieg_K 4x23 6iq4 6jxd 6ke9 6l9h 6le9 7ccr 7xd1 8ott
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--------RG------          +-------------------6iy2_A    
                                !  
  --RT--RG------------          !                    +6pww_K    
                             +-16     +--------------1 
  --RG--------RT------       !  !  +-10              +8grq_A    
                             !  !  !  !  
  --RG--------RT------       !  !  !  +--------------7zs9_e    
                             !  +-13  
  HARA----LT--RC------       !     !                 +3kwq_E    
                             !     !  +--------------4 
  --RG----LC--RT------       !     +-11              +8hr1_E    
                             !        !  
  --RT----LA--RG------       !        +---------------7unc_a    
                             !  
  HARAYT--LT--RC------       !              +----------------4xzq_E    
                             !              !  
  ----------------KG--       !           +-12                 +7nkx_f    
                             !           !  !               +-5 
  ------------RA------     -19           !  +---------------6 +1zla_C    
                             !           !                  ! 
  ------------RG------       !        +-14                  +8jla_C    
                             !        !  !  
  ------------RC------       !        !  !             +---7xyf_B    
                             !        !  !     +-------7 
  ------------RG------       !        !  !     !       +---8ox0_C    
                             !     +-15  +-----9 
  ----------IT--------       !     !  !        !           +3wkj_D    
                             !     !  !        +-----------2 
  --------------RA----       !     !  !                    +6g0l_D    
                             !  +-17  !  
  --RCYA------RG------       !  !  !  !        +---------7ccr_A    
                             !  !  !  +--------8 
  ------------RG------       !  !  !           +---------5x0y_G    
                             +-18  !  
  HGRGYG--QC--RG------          !  +--------------------7y7i_E    
                                !  
  ------------RT------          !                     +7kbd_C    
                                +---------------------3 
  ------------RA----RA                                +6a5l_g    
                           

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updated Mon Aug 4 02:34:25 2025