8wg5_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	3a6n_ABCDEFGH 3w98_ABCDEFGH 4x23_ABCDEFG 4x23_KLMNOPQ 5b1l_ABCDEFGH 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6jxd_ABCDEFGH 6ke9_ABCDEFGH 6l9h_ABCDEFGH 6le9_ABCDEFGH 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7lya_ABCDEFGH 7xd1_ABCDEFGH 7yqk_ABCDEFGH 8ieg_CDEFGHKL 8jla_ABCDEFGH 8wg5_ABCDEFGH
redundant complexes	3a6n_A 6ipu_A 7ccq_A 7lya_A 8ieg_K 3w98 4x23 5b1l 6iq4 6jxd 6ke9 6l9h 6le9 7ccr 7xd1 7yqk 8jla 8ott
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wg5_E interface=2,3,46, pHRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger

  
  --RT----LA----RG----                                 +7unc_a    
                                        +--------------1 
  --RG----------RT----                +-8              +6px1_A    
                                      ! ! 
  --RG----------RT----       +--------9 +--------------7zs9_e    
                             !        ! 
  --RT--RG------------       !        !             +6pww_K    
                             !        +-------------5 
  --------------RC----       !                      +7ux9_E    
                             !  
  --RCYA--------RG----       !                 +--------7ccr_A    
                             !         +-------7 
  --------------RC----     -14         !       +--------7yqk_C    
                             !     +--10  
  ----------------KG--       !     !   !                +7nkx_f    
                             !     !   +----------------2 
  --------------RA----       !  +-12                    +7e9c_F    
                             !  !  !  
  ----------IT--------       !  !  !              +-----3wkj_D    
                             !  !  +--------------6 
  --------------RG----       +-13                 +-----8upf_G    
                                !  
  HGRGYG--QC----RG----          !    +----------------7y7i_E    
                                !    !  
  --------------RT----          +---11                  +7kbd_C    
                                     !                +-3 
  --------------RA--RA               +----------------4 +6a5l_g    
                                                      ! 
  ------------HGRG----                                +8rbx_V

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updated Sun Jan 11 01:45:11 2026