8wg5_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	4x23_ABCDEFG 4x23_KLMNOPQ 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6jxd_ABCDEFGH 6ke9_ABCDEFGH 6l9h_ABCDEFGH 6le9_ABCDEFGH 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7xd1_ABCDEFGH 8ieg_CDEFGHKL 8wg5_ABCDEFGH
redundant complexes	6ipu_A 7ccq_A 8ieg_K 4x23 6iq4 6jxd 6ke9 6l9h 6le9 7ccr 7xd1 8ott
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wg5_E interface=2,3,46, pHRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirger

  
  --RT----LA--RG--                        +-----------------------------7unc_a    
                                        +-3 
  --RG--------RG--                    +-4 +-----------------------------6iy2_A    
                                      ! ! 
  --RG--------RT--                  +-5 +-----------------------------7zs9_e    
                                    ! ! 
  HARA----LT--RC--                +-6 +-----------------------------3kwq_E    
                                  ! ! 
  --RT--RG--------              +-7 +-----------------------------6pww_K    
                                ! ! 
  HARAYT--LT--RC--            +-8 +-----------------------------4xzq_E    
                              ! ! 
  --RCYA------RG--          +-9 +-----------------------------7ccr_A    
                            ! ! 
  HGRGYG--QC--RG--       +-10 +-----------------------------7y7i_E    
                         !  !  
  --------------KG       !  +-----------------------------7nkx_f    
                       -11  
  ------------RC--       !                          +--7xyf_B    
                         !            +-------------1 
  ------------RT--       +------------2             +--7kbd_C    
                                      ! 
  ----------IT----                    +----------------3wkj_D

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updated Sat Sep 14 12:32:15 2024