interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
(CAATENHANCER BINDING PROTEIN BETA)
referenceTahirov et al.
sourceHOMO SAPIENS
experimentX-ray (resolution=2.45, R-factor=0.229)
structural superfamilyLeucine zipper domain;
sequence familyBasic region leucine zipper;
multimeric complexes1gtw_AB 1gu4_AB 1gu5_AB 1h88_ABC 1h89_ABC 1h8a_ABC 1hjb_ABC 1hjb_DEF 1io4_ABC 2e42_AB 2e43_AB 6mg1_AB 6mg2_AB 6mg3_AB 7l4v_AB 7upz_AB
reference complex6mg1_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNAVSR

Estimated binding specificities ?

readout + contactlogo
# IC=3.036 IC/col=0.607 n_of_columns=5 specificity:   
A |  17   5  12  83  79
C |  42   4  72   0   6
G |  20  81   5  12   6
T |  17   6   7   1   5
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ------------RG------NC----YGATRC   L                                +4eot_A    
                                                               +------1 
  --RG--NC----YGAT----CTRG--------   L            +------------5      +2wt7_B    
                                                  !            ! 
  QG----QC----FTRC----------------   L            !            +-------7aw7_D    
                                         +--------6 
  ------NT----ATAT----STRG--------   L   !        !                   +1dh3_C    
                                         !        !               +---2 
  ----RA----NT----AAVT----STRG----   L   !        !               !   +1hjb_A    
                                       --7        +---------------4 
  ------NC----AT------STRA--------       !                        !  +-1a02_J    
                                         !                        +--3 
  ------NCTT----AT------RG--------   L   !                           +-2dgc_A    
                                         ! 
  --------NCRT--ATAT----STRG------       +-----------------------------1t2k_D

home
updated Mon Dec 18 05:08:48 2023