3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Mon Jan 5 14:04:31 2026

structure name	THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3T
reference	Kurumizaka et al. 'Cell 18 593 2017
source	MUS MUSCULUS
experiment	X-ray (resolution=2.35, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5gtc_H 5o9g_F 6a5l_d 6a5l_g 6r8y_H 6upk_H 6x0n_f 7ccr_A 7d1z_H 7jzv_N 7lyb_G 7nkx_f 7scy_H 7u0g_M 7vdt_B 7xzx_N 8h0v_h 8txv_G 8u14_G 8upf_G 8wg5_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5b1l_A interface=3,4,6,28,46, phRYhPgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeacesylvglfedtnlcaihakrvtimpkdiqlarrirger > 5b1l_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5b1l_C interface=1,32, RakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5b1l_D interface=8, grkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytss > 5b1l_E interface=3,4,28,46, phRYhpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeacesylvglfedtnlcaihakrvtimpkdiqlarrirger > 5b1l_F interface=27, rkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5b1l_G interface=28, ktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5b1l_H interface=1, Rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytss