| structure name | THE BINDING MODE OF CYPRINID HERPESVIRUS3 ORF112-ZALPHA TO Z-DNA (ORF112) |
| reference | Athanasiadis et al. J.Biol.Chem. 290 30713 2015 |
| source | CYPRINID HERPESVIRUS 3 |
| experiment | X-ray (resolution=1.50, R-factor=0.179) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| multimeric complexes | 4wcg_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--------------------------YGRG---------- +4wcg_A +--------------5 --------------------------YG------------ +--6 +3eyi_B ! ! --------STRGQTQA--ST------------HG--KT-- L ! +---------------7t8k_B +-----8 --------------------RG----YG------------ ! ! +1qbj_C ! ! +---------------1 ------------TTHT----KG------------RC---- L ! +--7 +7b0c_A +-10 ! ----------RCTT----TTHT--LA-------------- L ! ! +---------------7e1b_B ! ! ----------RG----DTVT----ST--------RC---- L ! ! +4nhj_A +-11 +------------------------3 ----------RG----DTVT----STRG------WT---- L ! ! +6lxn_A ! ! ----EGRGSARGMCTT--RT-------------------- L ! ! +-------------------4wwc_B ! +-----9 ----ETNTSCRGHC----RT--------------QA---- +-13 +-------------------5d4s_B ! ! --------TT--PTTC--STNT----------------RT L ! ! +4lln_I ! ! +------------------------4 ------ET--RGTCTG--STRG----------------KT L ! ! ! ! +6q2b_B +-14 +-12 +-2 ------NGLTKTPTST--TT--------RT--------RT L ! ! ! +7el3_B ! ! ! --------SGRGPT----SGRG------------------ L +-15 ! +-------------------------7bhy_A ! ! ! ------YAKTPTPG----YTRG------------------ L ! ! +---------------------------4mtd_D +-16 ! ----RA--ST--ECTT--RAKA------------HT---- ! ! +---------------------------7oz3_B +-17 ! --RC------------------------------------ ! ! +---------------------------6l9z_S +-18 ! --------SG--AT----YTRG------------------ L ! ! +---------------------------4rb3_D +-19 ! ----RC---------------------------------- ! ! +----------------------------7cow_T -20 ! SG----------ETKG--RGQG----QT------------ L ! +----------------------------4esj_A ! --------------KT----RCEC------NA-------- L +----------------------------1msf_C |
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updated Fri Sep 13 18:54:38 2024