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legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'MAGENTA14' DNA SEQUENCE
(HOMEOBOX PROTEIN EXTRADENTICLE)
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=3.03, R-factor=0.270)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes1b72_AB 1b8i_AB 1puf_AB 2r5y_AB 2r5z_AB 4cyc_AB 4uus_AB 4uus_EF 5zjq_AB 5zjr_AB 5zjs_AB
reference complex1puf_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRNNIR

Estimated binding specificities ?

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# IC=3.968 IC/col=0.794 n_of_columns=5 specificity:   
A |   9   0  96   9  67
C |  11   0   0   9  11
G |   9  96   0  11   9
T |  67   0   0  67   9
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updated Thu Sep 12 22:38:33 2024