interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'MAGENTA14' DNA SEQUENCE
(HOMEOBOX PROTEIN EXTRADENTICLE)
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=3.03, R-factor=0.270)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRNNIR

Estimated binding specificities ?

readout + contactlogo
# IC=3.398 IC/col=0.566 n_of_columns=6 specificity:   
A |  14  55   0   0  60  19
C |  13  13   1  96  12  19
G |  13  16   1   0  12  20
T |  56  12  94   0  12  38
scan!

home
updated Tue Dec 17 03:12:59 2024