6iy2_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6iy2_ABCDEFGHO 6iy3_ABCDEFGHO
redundant complexes	6iy3
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6iy2_A interface=5,48, kkphRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirgera

  
  HTRG------RT                      +8g57_E    
                         +----------2 
  --RT--RG----           !          +6pww_K    
                       +-7 
  --RGYA--LC--         ! !          +5mlu_A    
                       ! +----------3 
  HTRA----LTRC         !            ! +5xm1_A    
                     +-8            +-1 
  --RA----LT--       ! !              +4z5t_A    
                     ! ! 
  --RG--RC----       ! !           +6fq8_A    
                   --9 +-----------4 
  --RG--------       !             +6y5d_Q    
                     ! 
  --RT------RA       !      +-------7ea8_A    
                     +------6 
  ----------RA              !    +--7xsx_a    
                            +----5 
  ----------RC                   +--6qld_f

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updated Fri Sep 13 22:00:16 2024