3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Sat Dec 16 11:59:34 2023

structure name	CRYO-EM STRUCTURE OF DOT1L BOUND TO H2B UBIQUITINATED NUCLEOSOME
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5gtc_H 5o9g_F 5o9g_G 6a5l_d 6buz_H 6c0w_H 6ftx_B 6g0l_M 6jm9_A 6r8y_H 6see_H 6t7a_H 6upk_H 6x59_H 6y5d_H 7d1z_H 7e8d_H 7k5x_H 7k60_H 7k63_H 7nkx_f 7pet_H 7scy_H 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8h0v_h 8t9f_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jma_A interface=3,28,46, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 6jma_B interface=25, vlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 6jma_C interface= aktrssraglqfpvgrvhrllrkgNyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 6jma_D interface=2, tRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 6jma_E interface=3,28,46, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 6jma_F interface=17,30, krhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 6jma_G interface= aktrssraglqfpvgrVhrllrkgnyaerVgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 6jma_H interface=2, tRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak