Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7xcr_ABCDEFGH 7xct_ABCDEFGHL
redundant complexes7xct
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  HARA--LTRC                +--------------------------3kwq_E    
                            !  
  --RA--LTRC                !                      +------6jm9_A    
                            !                   +--3 
  --------RA                !                   !  !   +--7xsx_a    
                            !                   !  +---2 
  --------RC                !              +----5      +--6qld_f    
                         +-12              !    ! 
  --RG----RG             !  !              !    !         +7yqk_E    
                         !  !       +------6    +---------1 
  HTRG----RT             !  !       !      !              +8g57_E    
                         !  !     +-8      ! 
  --RG----RT             !  !     ! !      +--------------8cww_A    
                         !  !  +-10 ! 
  --RT----RG             !  !  !  ! +---------------------7uv9_E    
                         !  +-11  !  
  --RGYALCRT          +-13     !  +----------------------8byq_e    
                      !  !     !  
  ------LT--          !  !     +-----------------------7ywx_E    
                      !  !  
  --RG--LC--          !  !                 +---------8bvw_e    
                      !  !       +---------4 
  --------RT       +-14  !    +--7         +---------7lyb_G    
                   !  !  !    !  ! 
  --RT--LARG       !  !  +----9  +-------------------7unc_a    
                   !  !       ! 
  --RG------     -15  !       +----------------------6a5l_e    
                   !  !  
  --RA------       !  +-----------------------------6kxv_A    
                   !  
  --------RA       +-----------------------------1kx5_G    
                 

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updated Sat Sep 14 07:11:48 2024