7xcr_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7xcr_ABCDEFGH 7xct_ABCDEFGHL
redundant complexes	7xct
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xcr_E interface=3,4,28, phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdftdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera

  
  RG--------                                      +8jh2_e    
                                  +---------------1 
  RG--RT----               +------4               +8grq_A    
                           !      ! 
  RGLCRT----             +-6      +---------------8hr1_E    
                         ! ! 
  ----RG----           +-7 +----------------------8ox0_C    
                       ! ! 
  ----RG----         +-8 +------------------------5x0y_G    
                     ! ! 
  ----RA--RA         ! +-------------------------6a5l_g    
                   +-9 
  ----RA----       ! !                 +---------1zla_C    
                   ! !         +-------3 
  ------RA--       ! !         !       +---------6g0l_D    
                 -10 +---------5 
  ----RG----       !           !                 +8txv_G    
                   !           +-----------------2 
  ----RG----       !                             +8jla_C    
                   !  
  ----RT----       +-----------------------------8u14_G

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updated Wed Dec 18 14:02:37 2024