interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF INNER KINETOCHORE CCAN-CENP-A COMPLEX
referenceMcLaughlin et al. Nature 574 278 2019
experimentX-ray (resolution=4.15, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6qld_NQ 6qld_abdefghi 8ow0_ILT
redundant complexes8ow0
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC----                               +6qld_f    
                               +---------5 
  --RT----                     !         ! +8u14_G    
                          +----8         +-1 
  --RG----                !    !           +8ox0_C    
                          !    ! 
  --RA----                !    +----------1zla_C    
                       +-11  
  --RG----             !  !                +8txv_G    
                       !  ! +--------------2 
  --RG----          +-12  +-9              +5x0y_G    
                    !  !    ! 
  --RA--RA          !  !    +--------------6a5l_g    
                 +-13  !  
  --RG----       !  !  +-----------------8jla_C    
                 !  !  
  ----RA--       !  !                  +-6g0l_D    
                 !  +------------------6 
  LC------       !                     +-8bvw_e    
               -14  
  LARG----       !                      +7unc_a    
                 !                   +--3 
  --RT----       !       +-----------7  +8grq_A    
                 !       !           ! 
  --RA----       +------10           +--7xsx_a    
                         !  
  --RA----               !              +8rbx_M    
                         +--------------4 
  LCRT----                              +8hr1_E    
               

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updated Wed Dec 18 05:18:35 2024