interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF INNER KINETOCHORE CCAN-CENP-A COMPLEX
referenceMcLaughlin et al. Nature 574 278 2019
experimentX-ray (resolution=4.15, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6qld_NQ 6qld_abdefghi 8ow0_ILT
redundant complexes8ow0
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC----                            +6qld_f    
                             +--------6 
  --RT----                   !        ! +8u14_G    
                             !        +-1 
  --RG----                 +-9          +8ox0_C    
                           ! ! 
  --RG----                 ! !         +8txv_G    
                     +----10 +---------2 
  --RG----           !     !           +5x0y_G    
                     !     !  
  --RA----       +--12     !           +1zla_C    
                 !   !     +-----------5 
  --RA--RA       !   !                 +6a5l_g    
                 !   !  
  --RG----       !   +-----------------8jla_C    
                 !  
  LARG----       !                      +7unc_a    
               -14                   +--3 
  --RT----       !       +-----------7  +8grq_A    
                 !       !           ! 
  --RA----       !  +---11           +--7xsx_a    
                 !  !    !  
  --RA----       !  !    !              +8rbx_M    
                 +-13    +--------------4 
  LCRT----          !                   +8hr1_E    
                    !  
  LC------          !          +--------8bvw_e    
                    +----------8 
  ----RA--                     +--------6g0l_D    
               

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updated Sun Aug 3 12:59:17 2025