Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
referenceSubramaniam et al. 'Cell 27 387 2019
experimentX-ray (resolution=3.70, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6r1t_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  RG------           +-----------------------------7k63_H    
                   +-7 
  RG------         ! +-----------------------------3x1t_H    
                 +-8 
  ------RA       ! !                          +--7xsx_a    
                 ! +--------------------------4 
  ------RC       !                            +--6qld_f    
                 ! 
  --LC----       !                               +5mlu_A    
               --9                             +-1 
  ------RT       !                   +---------3 +8g57_E    
                 !                   !         ! 
  --LT----       !       +-----------5         +4z5t_A    
                 !       !           ! 
  --LT--RC       !       !           !         +5xm1_A    
                 +-------6           +---------2 
  ------RA               !                     +7ea8_A    
                         ! 
  ----KT--   L           +---------------------7cvo_A

home
updated Fri Sep 13 23:17:19 2024