Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
referenceSubramaniam et al. 'Cell 27 387 2019
experimentX-ray (resolution=3.70, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6r1t_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                        +----9fgq_D    
                   !           +------------4 
  ----RG----       !           !            +----5x0y_G    
                 -10         +-5 
  ----RA----       !         ! !                 +1zla_C    
                   !      +--6 +-----------------1 
  ----RG----       !      !  !                   +8ox0_C    
                   !      !  ! 
  ----RT----       !      !  +-------------------8grq_A    
                   +------9 
  ----RG----              !                       +8txv_G    
                          ! +---------------------2 
  ----RG----              ! !                     +8jla_C    
                          +-8 
  ----RT----                !                     +8u14_G    
                            ! +-------------------3 
  ----RA--RA                +-7                   +6a5l_g    
                              ! 
  --LCRT----                  +--------------------8hr1_E

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updated Wed Dec 18 05:21:00 2024