3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
referenceSubramaniam et al. 'Cell 27 387 2019
experimentX-ray (resolution=3.70, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6r1t_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                        +----9fgq_D    
                   !           +------------3 
  ----RG----       !           !            +----5x0y_G    
                 -10    +------6 
  ----RA----       !    !      !                 +1zla_C    
                   !    !      ! +---------------1 
  ----RG----       !    !      +-5               +8ox0_C    
                   !    !        ! 
  ----RG----       !    !        +---------------8jla_C    
                   +----9 
  ----RG----            !                        +8txv_G    
                        !      +-----------------2 
  ----RA--RA            !      !                 +6a5l_g    
                        !   +--7 
  ----RT----            !   !  !     +-----------8u14_G    
                        +---8  +-----4 
  --LCRT----                !        +-----------8hr1_E    
                            ! 
  ----RT----                +--------------------8grq_A    
                 

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updated Sun Aug 3 13:01:36 2025