| structure name | POL DOMAIN OF POL1 FROM M. SMEGMATIS COMPLEX WITH DNA PRIMER-TEMPLATE AND DNTP (DNA polymerase I) |
| reference | Goldgur et al. 'Nucleic 48 3165 2020 |
| source | Mycolicibacterium smegmatis |
| experiment | X-ray (resolution=1.90, R-factor=0.192) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRNNRYNQH |
Estimated binding specificities ?
| readout + contact |  |
A | 15 5 26 50 C | 60 13 14 40 G | 14 69 11 2 T | 7 9 45 4scan! |
Dendrogram of similar interfaces ?
matrix format------------------------RC----------RANGNGRT----YG--YT--SCYC--------------------------NTQT-- L +-6vdd_A +-1 ----------------------KT----YG------RGNGNGRC----YG--YAIGSCYC----NG--RC--------FG--------QAHG +-2 +-4yfu_D ! ! LCNGKGYGMGRCEG----------------SGHGVC-------------------------------------------------------- +------4 +-1kln_A ! ! ----------------------NA--KG--------RC--NT----QC----------------------------NG--YGATRT--QGHC ! +---4x0p_B +------7 --------------IAAAVAAAKC------------RTNGNC----TC----YCMCSAHARAQAEA--------------------NGQG-- ! ! +--6fbc_A ! ! +------3 --------------------------------------NANC------FC--YG------RG----------------------RGNGQC-- L ! ! ! +--1tau_A +----------8 +-6 ----------------------KT------------RG------EGKGYGACYCAC----RC------------------QTATRTNGQGHC L ! ! ! +-------4xvk_A ! ! +-5 ------------------------KA--------------NT----------------------------------------------QGHT L --9 ! +-------6xbu_A ! ! ----------------------------KT------RTNG------------YA----------------------------------QA-- ! +-----------------1x9m_A ! ------------------------------------------------------------------SGRGPTSGRG---------------- L +----------------------------7bhy_A |
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updated Sat Sep 14 00:05:39 2024