| structure name | DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX (PROTEIN DNA POLYMERASE I KLENOW FRAGMENT E.C.2.7.7.7) |
| reference | Derbyshire et al. |
| source | ESCHERICHIA COLI |
| experiment | X-ray (resolution=3.20, R-factor=?) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; 3'5' exonuclease; |
| reference complex | 8oo6_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatLCNGKGYGMG----RCFCEC----EG------------------SGHGVC-------------------------------------------------- +--1kln_A +-3 ------------------------------------RC------------RANGNGRT----YG--YT--SCYC------------------NTQT---- L ! ! +-6vdd_A +------4 +-1 ------------------------------------KT----YG------RGNGNGRC----YG--YAIGSCYC----NGRC--FG--------QA--HG ! ! +-4yfu_D ! ! ------------------------------------NA--KG--------RC--NT----QC--------------------NG--YGATRT--QG--HC +----6 +---4x0p_B ! ! --------------------------IA--------KC------------RTNGNC----TC----YCMCSAHARAQAEA------------NGQG---- ! ! +--6fbc_A ! +-------2 ----------------------------------------------------NANC------FC--YG------RG--------------RGNGQC---- L +------------9 +--1tau_A ! ! --------------------------------------KA--------------NT--------------------------------------QG--HT L ! ! +-------6xbu_A ! ! +-----5 ------------------------------------KT------------RG------EGKGYGACYCAC----RC----------QTATRTNGQG--HC L +-10 +-7 +-------4xvk_A ! ! ! ----------------------------------------KT--------RTNG------------YA--------------------------QA---- ! ! +-------------1x9m_A +-11 ! ----------DAKT------FA------------------------------------------------------------------------------ ! ! +----------------------------3qex_A ! ! ----------------------------ATYTDGKG----------------------------TTYT--FA------------------------HT-- -12 ! +-------------1msw_D ! +--------------8 ------------------------------------------------------------QG--TGYGVG--YT-------------------------- L ! +-------------4boc_A ! TT--------------------DT---------------------------------------------------------------------------- L +-----------------------------4jrp_A |
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updated Thu Sep 12 14:48:14 2024