| structure name | CRYSTAL STRUCTURE OF BACILLUS THURINGIENSIS PLCR IN COMPLEX WITH THE PEPTIDE PAPR7 AND DNA (Transcriptional activator PlcR protein) |
| reference | Bouillaut et al. Proc.Natl.Acad.Sci.USA 110 1047 2013 |
| source | Bacillus thuringiensis |
| experiment | X-ray (resolution=2.40, R-factor=0.182) |
| structural superfamily | lambda repressor-like DNA-binding domains;TPR-like; |
| sequence family | Helixturnhelix; |
| multimeric complexes | 3u3w_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | HQSESRV |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 96 13 43 C | 0 0 96 0 13 13 G | 0 0 0 0 16 13 T | 96 96 0 0 54 27scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PLCR | ||
| TATGCATTATTTCATA | PubMed | 3u3w_B(3.68e-04), 3u3w_AB(7.89e-12) |
Dendrogram of similar interfaces ?
matrix format------HCQASTETSARG----VT---- L +----------3u3w_B +--------------5 ----CTSGKTSGQTSTRC---------- L ! ! +6w1f_A ! +---------3 ------SGKGSCQTSTRG---------- L ! +6w1a_A ! --QT--STNTVTATSTQTRTETTT---- L ! +2r1j_L --8 +------------1 ----RTTT--AT--STRG----TT---- L ! ! +6chv_D ! +-----6 ----AT--QAAT--SA------------ ! ! ! +4z5h_A ! ! ! +-----2 ----STKCQAAT--SA------------ L +------7 +------4 +3dnv_B ! ! RT--------RG----NT----ETRTYA L ! +-----7f9h_B ! ----ATATTTPTTTNT------------ L +------------------6fix_D |
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updated Fri Sep 13 17:45:19 2024