3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYS13 AND LYS15 IN COMPLEX WITH BARD1 (RESIDUES 415- 777)
(HISTONE H2A TYPE 1-BE)
sourceHOMO SAPIENS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6nqa_ABCDEFGH 7lyc_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH
redundant complexes6nqa 8txv 8txw 8txx
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--           +-----------------------------8txv_G    
               +-1 
  RT--       +-2 +-----------------------------8u14_G    
             ! ! 
  RT--     --3 +-----------------------------8smw_G    
             ! 
  RGRG       +-----------------------------8kcb_A    
           

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updated Sat Sep 14 03:11:38 2024