3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF H2BK34UB NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3kwq_ABCDEFGH 7xd0_ABCDEFGHKL 7yqk_ABCDEFGH
redundant complexes3kwq 7yqk
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RT----                                     +8smw_G    
                                +--------------1 
  --RG----             +--------6              +5x0y_G    
                       !        ! 
  --RG----             !        +--------------8jla_C    
                       !  
  --RA----             !              +---------1zla_C    
                       !          +---4 
  ----RA--             !          !   +---------6g0l_D    
                       !        +-5 
  --RG----       +----10        ! !             +8txv_G    
                 !     !        ! +-------------3 
  --RA--RA       !     !   +----7               +6a5l_g    
                 !     !   !    ! 
  --RT----       !     !   !    !               +8u14_G    
                 !     ! +-8    +---------------2 
  --RG----     -11     ! ! !                    +8ox0_C    
                 !     +-9 ! 
  LCRT----       !       ! +--------------------8hr1_E    
                 !       ! 
  --RT----       !       +---------------------8grq_A    
                 !  
  --RG--RG       +-----------------------------8kcb_A

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updated Sun Aug 3 21:14:05 2025