Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF H2BK34UB NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3kwq_ABCDEFGH 7xd0_ABCDEFGHKL 7yqk_ABCDEFGH
redundant complexes3kwq 7yqk
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RG----            +-----------------------------8jla_C    
                    +-9 
  --RG----          ! +-----------------------------5x0y_G    
                    !  
  --RT----          !                               +8smw_G    
                    !                             +-1 
  --RA----          !                   +---------3 +1zla_C    
                    !                   !         ! 
  --RA--RA       +-10          +--------4         +6a5l_g    
                 !  !          !        ! 
  --RT----       !  !          !        !         +8u14_G    
                 !  !        +-6        +---------2 
  --RG----       !  !        ! !                  +8ox0_C    
                 !  !      +-7 ! 
  LCRT----       !  !      ! ! +------------------8hr1_E    
               -11  !      ! ! 
  --RT----       !  +------8 +--------------------8grq_A    
                 !         ! 
  --RG----       !         !            +---------8txv_G    
                 !         +------------5 
  ----RA--       !                      +---------6g0l_D    
                 !  
  --RG--RG       +-----------------------------8kcb_A

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updated Wed Dec 18 14:06:21 2024