8atw_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 6-MER RNA, PPPGPGPAPAPAPU (IC6)
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
multimeric complexes	6ymv_AB 6ymw_AB 8ap1_AB 8att_AB 8atv_AB 8atw_AB 8c5s_AB 8c5u_AB 8q63_AB
reference complex	6ymv_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8atw_A interface=135,137,145,148,220,222,224,225,244,377,378,381,407,411,595,599,602,604,605,606,607,612,709,718,731,739,743, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklNsTggviegmRtaRavisvgkaiemefrseqvlkkilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerLiasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdRSnrCdtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVTYVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs
interface signature	NTRRYNSKLRSCRYQTYVTYVQQFRPH

Estimated binding specificities ?

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# IC=9.764 IC/col=0.697 n_of_columns=14

specificity:

A |   0  96  13  24  24  24  24   0  24  16  96  96   0  96
C |  96   0  16  24  24  24  24   0  24  54   0   0   0   0
G |   0   0  13  24  24  24  24  96  24  13   0   0   0   0
T |   0   0  54  24  24  24  24   0  24  13   0   0  96   0

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updated Sat Aug 2 22:55:01 2025