Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF SSX1 BOUND TO THE UNMODIFIED NUCLEOSOME AT A RESOLUTION OF 3.02 ANGSTROM
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6fq5_ABCDEFGH 8hr1_ABCDEFGH
redundant complexes6fq5
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RAAANA------       +-----------------------------1jfi_B    
                     !  
  ------RG----       !                                +7e9c_G    
                     !                 +--------------1 
  ------RG----       !            +----6              +8jla_C    
                     !            !    ! 
  ------RG----       !            !    +--------------8ox0_C    
                     !          +-8 
  ------RA----       !          ! !                  +1zla_C    
                   -12          ! !    +-------------3 
  ------RA--RA       !          ! !    !             +6a5l_g    
                     !       +--9 +----7 
  ------RT----       !       !  !      !              +8u14_G    
                     !       !  !      +--------------2 
  ------RG----       !       !  !                     +5x0y_G    
                     !    +-10  ! 
  ------RT----       !    !  !  +---------------------8grq_A    
                     !    !  !  
  ------RG----       !    !  !            +-----------8txv_G    
                     +---11  +------------5 
  --LC--RT----            !               +-----------8hr1_E    
                          !  
  ------RA----            !                     +--7xsx_a    
                          +---------------------4 
  --------RA--                                  +--6g0l_D    
                   

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updated Wed Dec 18 18:23:00 2024