Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF SSX1 BOUND TO THE UNMODIFIED NUCLEOSOME AT A RESOLUTION OF 3.02 ANGSTROM
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6fq5_ABCDEFGH 8hr1_ABCDEFGH
redundant complexes6fq5
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RAAANA----                          +-------1jfi_B    
                             +--------4 
  IT--------                 !        +-------6r8y_H    
                          +--6 
  --LT----RG              !  !               +8eue_E    
                          !  +---------------2 
  ------RT--            +-7                  +7wlr_E    
                        ! ! 
  ------RG--            ! !                +--7e9c_G    
                        ! !   +------------3 
  ------RA--         +--8 +---5            +--7xsx_a    
                     !  !     ! 
  ------RA--         !  !     +---------------6t7a_C    
                   +-9  ! 
  ------RT--       ! !  +--------------------7lyb_G    
                   ! ! 
  ------RG--     -10 !                       +7k6p_A    
                   ! +-----------------------1 
  --LT--RC--       !                         +5xm1_A    
                   !  
  ------RG--       +-------------------------5t5k_E

home
updated Wed Dec 20 03:38:15 2023