interface graph thumbnail
legend  pdf

structure nameCRYO-EM STRUCTURE OF IC8', A SECOND STATE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, PPPGPGPUPAPAPAPUPG
experimentNMR
structural superfamilyDNA/RNA polymerases;
sequence familyDNAdependent RNA polymerase;
multimeric complexes6ymv_AB 6ymw_AB
reference complex6ymv_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNRARIQYHNSKSDRYYVTYVQQFISRHK

Estimated binding specificities ?

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# IC=8.367 IC/col=0.270 n_of_columns=31 specificity:   
A |  24  24  24  24  24  24  24  24  12  96   0  96  27  24   0  60  24  22  27  24  24  20   9   0  45  31  30  24  24  24   9
C |  24  24  24  24  24  24  24  24  12   0   0   0  22  24   0  12  24  22  25  24  24  20  11  96  16  21  22  24  24  24  69
G |  24  24  24  24  24  24  24  24  12   0   0   0  22  24   0  12  24  25  22  24  24  20  67   0  16  23  22  24  24  24   9
T |  24  24  24  24  24  24  24  24  60   0  96   0  25  24  96  12  24  27  22  24  24  36   9   0  19  21  22  24  24  24   9
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updated Tue Dec 19 04:47:47 2023