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legend  pdf

structure nameCRYSTAL STRUCTURE OF CRX-RET4 OLIGONUCLEOTIDE COMPLEX
(Cone-rod homeobox protein)
referenceSrivastava et al. 'To ? ? ?
sourceHomo sapiens
experimentX-ray (resolution=2.90, R-factor=0.253)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes9b8u_AB 9b8u_CD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRVKN

Estimated binding specificities ?

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# IC=6.556 IC/col=0.937 n_of_columns=7 specificity:   
A |  54   0  17   0   8  96   0
C |  17   0  54   0   0   0   0
G |  17  96  17   0  10   0  96
T |   8   0   8  96  78   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RT--QTVAQTNA--------   L                                   +8osb_E    
                                                           +-1 
  RT----VTKGNA----KA--   L                              +--2 +2lkx_A    
                                                        !  ! 
  RA----IAQTNA--------   L                +-------------4  +5ego_B    
                                          !             ! 
  RT----NT--NA--IARG--   L          +-----6             +--1b72_B    
                                    !     ! 
  ------NCICRGRG------   L          !     !                +4xrm_B    
                                    !     +----------------3 
  --RT--NT--NA--IARG--   L      +---8                      +4cyc_B    
                                !   ! 
  RT----IAQCNA--MG----   L      !   !                 +----1b72_A    
                                !   !   +-------------5 
  RC----IAQCNA--YC----   L   +--9   +---7             +----3rkq_B    
                             !  !       ! 
  --------------YCFAKC   L   !  !       +------------------6pe2_B    
                           -10  ! 
  ------VTCCNA--QA--RT   L   !  +--------------------------8g87_X    
                             !  
  RT------YTNC----NAKG   L   +-----------------------------8pi8_B    
                           

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updated Sun Jan 11 01:58:27 2026