3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
(HISTONE H2B.2)
referenceRichmond et al.
sourceXENOPUS LAEVIS
experimentX-ray (resolution=1.94, R-factor=0.209)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1eqz_ABCDEFGH 1f66_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 2fj7_ABCDEFGH 2nzd_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3kuy_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4kgc_ABCDEFGH 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5xf6_ABCDEFGH 6m4g_ABCDEFGH 6m4h_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6wkr_CEIJKMOQRS 7m1x_ABCDEFGH 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh
redundant complexes5cpi 4j8u 6hts 4j8w 1eqz 6la8 6x5a 5cpj 3w98 6la9 3mnn 5cpk 5x0x 5avc 5b40 5ay8 4kgc 4wu8 6yov 6xjd 2fj7 5dnm 5dnn 6hkt 5b2i 6tem 6y5d 5b2j 7nl0 6o1d 6m3v 2cv5 3x1u 6m44 4wu9 7c0m 7bwd 5gxq 6v2k 7dbp 6kvd 6rny 3w99 5kgf 3afa 7tan 6jou 6m4d 6m4g 3x1s 6m4h 6fml 6k1i 6k1j 7u46 3ut9 6k1k 7u47 3w96 3uta 6inq 3av1 7u4d 3utb 3av2 5oxv 5cp6 5oy7 7d1z 7d20 6usj 6buz 7cow 6ir9 7scz 1f66 6om3 7pii 6a5l 5gtc 6a5o 6t9l 6a5p 7ywx 2nzd 6a5r 3ayw 7lya 7yyh 6a5t 7lyb 6a5u 7lyc 6t90 1p34 4ym5 6t93 4ym6 1p3a 7a08 5y0c 5b0y 1p3b 5y0d 5b0z 6jr0 1p3f 6jr1 1p3g 7bxt 1p3i 7by0 3wa9 1p3k 3mgq 1kx3 7vdt 1p3l 3mgr 1zbb 1kx4 7vdv 6j4w 1p3m 3a6n 3mgs 3kuy 7jo9 6j4x 1p3o 7joa 6j4y 1p3p 6j4z 5z30 1m18 6j50 6upk 1m19 6j51 6upl 4ld9 1m1a 3wtp 3aze 5gt0 5av6 5xf3 3azf 7r5r 5av8 5gse 5xf4 3azg 5av5 5av9 7kbd 5xf5 3azh 5z23 5avb 7kbe 3mgp 5xf6 3azi 6r0c 5b31 7kbf 3azj 5jrg 5b24 5zbx 6e0c 5b32 3azk 5b33 6x59 3azl 7ea8 3azm 6l49 6c0w 7k5x 3azn 6l4a 5x7x 3an2 7k5y 7k60 7k61 6wkr 6l9z 4j8v 6ugm 7k63 6la2 4j8x 3waa 6lab 6e0p 6uh5 7scy 6ler 7m1x 6kxv 3lz0 6t79 6v92 3lz1 6r8y 6t7a 6se0 3lel 6r8z 6t7b 6se6 7jzv 6r90 6t7c 6see 4z5t 6r91 6t7d 6sef 6r92 6seg 7e8d 6r93 4xuj 6r94
reference complex6m4g_G
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC----------                +------------------------6uph_D    
                                !  
  --RG----------                !                         +3x1t_H    
                                !          +--------------1 
  ------------RA             +-12     +----5              +6t79_C    
                             !  !     !    ! 
  ----------RART             !  !  +--8    +--------------4x23_Q    
                             !  !  !  ! 
  ------------RG             !  +-10  +-------------------5t5k_E    
                             !     !  
  ------------RC             !     +----------------------6qld_f    
                             !  
  ------------RT          +-13            +--------------6m4g_G    
                          !  !        +---6 
  ----LT--------          !  !        !   !             +7r5r_E    
                          !  !        !   +-------------3 
  ------LA------          !  !  +-----7                 ! +6buz_A    
                          !  !  !     !                 +-2 
  ------------RA          !  !  !     !                   +7k78_E    
                          !  !  !     ! 
  ------------RT       +-14  +-11     +------------------5y0d_C    
                       !  !     !  
  ------------RC       !  !     !             +----------6qld_g    
                       !  !     !    +--------4 
  ------------KG       !  !     +----9        +----------1jfi_A    
                     -15  !          ! 
  ------------RG       !  !          +-------------------6k1k_C    
                       !  !  
  RC------------       !  +-------------------------2nqb_D    
                       !  
  --------AT----       +---------------------------6r2v_C    
                     

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updated Sun Jun 28 03:47:21 2026