3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
(HISTONE H2B.2)
referenceRichmond et al.
sourceXENOPUS LAEVIS
experimentX-ray (resolution=1.94, R-factor=0.209)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1aoi_ABCDEFGH 1f66_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1s32_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 1zla_ABCDEFGH 2fj7_ABCDEFGH 2nzd_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kuy_ABCDEFGH 3kxb_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lja_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3mvd_ABCDEFGHKL 3o62_ABCDEFGH 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4kgc_ABCDEFGH 4ld9_ABCDEFGH 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 4z66_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5e5a_ABCDEFGH 5f99_ABCDEFGH 5hq2_ABGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5x0y_ABCDEFGHO 5xf6_ABCDEFGH 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6fq5_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH 6ftx_ABCDEFGHW 6g0l_ABCDEFGHMW 6iro_ABCDEFGHL 6iy2_ABCDEFGHO 6iy3_ABCDEFGHO 6j99_ABCDEFGH 6jm9_ABCDEFGH 6jma_ABCDEFGH 6jyl_ABCDEFGHK 6k1p_ABCDEFGHK 6nj9_ABCDEFGH 6nn6_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH 6nzo_ABCDEFGHS 6o96_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6pa7_ABCDEFGHKP 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6px1_ABCDEFGH 6px3_ABCDEFGHS 6r1t_ABCDEFGH 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6tem_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wkr_CEIJKMOQRS 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6z6p_ABCDEFGHM 6z6p_KN 6zhx_ABCDEFGH 7at8_ADEFGHIJK 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7e8i_ABCDEFGH 7ea5_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7k6p_ABCDEFGH 7k6q_ABCDEFGHK 7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK 7ktq_ABCDEFGH 7m1x_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7otq_ABCDEFGHK 7swy_ABCDEFGH 7tn2_ABCDEFGHW 7unc_ABabcdefgh 7und_ABEZabdefgh 7vdt_ABCDEFGHK 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 7xpx_ABCDEFGH 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8du4_ABCDEFGH 8etv_ABCDEF 8eue_ABCDEFHK 8euj_HMOabfhk 8g6g_ABCDEFGH 8g6h_ABCDEFGH 8g6q_ABCDEFGH 8g86_ABCDEFGH 8siy_CDEFGHIJ 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9f_ABCDEFGH 8t9h_ABCDEFGH 8thu_ABCDEFGH 8u5h_IJKMOQRS 9b3p_ABCDEFGH 9fh9_ABCDEFGH
redundant complexes5cpi 4j8u 6hts 4j8w 1eqz 6la8 6x5a 5cpj 3w98 6la9 3mnn 5cpk 5x0x 5avc 5b40 5ay8 4kgc 4wu8 6yov 6xjd 2fj7 5dnm 5dnn 6hkt 5b2i 6tem 6y5d 5b2j 7nl0 6o1d 6m3v 2cv5 3x1u 6m44 4wu9 7c0m 7bwd 5gxq 6v2k 7dbp 6kvd 6rny 3w99 5kgf 3afa 7tan 6jou 6m4d 6m4g 3x1s 6m4h 6fml 6k1i 6k1j 7u46 3ut9 6k1k 7u47 3w96 3uta 6inq 3av1 7u4d 3utb 3av2 5oxv 5cp6 5oy7 7d1z 7d20 6usj 6buz 7cow 6ir9 7scz 1f66 6om3 7pii 6a5l 5gtc 6a5o 6t9l 6a5p 7ywx 2nzd 6a5r 3ayw 7lya 7yyh 6a5t 7lyb 6a5u 7lyc 6t90 1p34 4ym5 6t93 4ym6 1p3a 7a08 5y0c 5b0y 1p3b 5y0d 5b0z 6jr0 1p3f 6jr1 1p3g 7bxt 1p3i 7by0 3wa9 1p3k 3mgq 1kx3 7vdt 1p3l 3mgr 1zbb 1kx4 7vdv 6j4w 1p3m 3a6n 3mgs 3kuy 7jo9 6j4x 1p3o 7joa 6j4y 1p3p 6j4z 5z30 1m18 6j50 6upk 1m19 6j51 6upl 4ld9 1m1a 3wtp 3aze 5gt0 5av6 5xf3 3azf 7r5r 5av8 5gse 5xf4 3azg 5av5 5av9 7kbd 5xf5 3azh 5z23 5avb 7kbe 3mgp 5xf6 3azi 6r0c 5b31 7kbf 3azj 5jrg 5b24 5zbx 6e0c 5b32 3azk 5b33 6x59 3azl 7ea8 3azm 6l49 6c0w 7k5x 3azn 6l4a 5x7x 3an2 7k5y 7k60 7k61 6wkr 6l9z 4j8v 6ugm 7k63 6la2 4j8x 3waa 6lab 6e0p 6uh5 7scy 6ler 7m1x 6kxv 3lz0 6t79 6v92 3lz1 6r8y 6t7a 6se0 3lel 6r8z 6t7b 6se6 7jzv 6r90 6t7c 6see 4z5t 6r91 6t7d 6sef 6r92 6seg 7e8d 6r93 4xuj 6r94
reference complex5x0y_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC----------                +------------------------6uph_D    
                                !  
  --RG----------                !                         +3x1t_H    
                                !          +--------------1 
  ------------RA             +-12     +----5              +6t79_C    
                             !  !     !    ! 
  ----------RART             !  !  +--8    +--------------4x23_Q    
                             !  !  !  ! 
  ------------RG             !  +-10  +-------------------5t5k_E    
                             !     !  
  ------------RC             !     +----------------------6qld_f    
                             !  
  ------------RT          +-13            +--------------6m4g_G    
                          !  !        +---6 
  ----LT--------          !  !        !   !             +7r5r_E    
                          !  !        !   +-------------3 
  ------LA------          !  !  +-----7                 ! +6buz_A    
                          !  !  !     !                 +-2 
  ------------RA          !  !  !     !                   +7k78_E    
                          !  !  !     ! 
  ------------RT       +-14  +-11     +------------------5y0d_C    
                       !  !     !  
  ------------RC       !  !     !             +----------6qld_g    
                       !  !     !    +--------4 
  ------------KG       !  !     +----9        +----------1jfi_A    
                     -15  !          ! 
  ------------RG       !  !          +-------------------6k1k_C    
                       !  !  
  RC------------       !  +-------------------------2nqb_D    
                       !  
  --------AT----       +---------------------------6r2v_C    
                     

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updated Thu Jan 8 18:12:17 2026