Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
referenceScience 340 1110 2013 Escherichia coli
experimentX-ray (resolution=3.50, R-factor=0.238)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4x23_ABCDEFG 4x23_KLMNOPQ
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RA--                                     +6g0l_D    
                             +---------------2 
  RC----                     !               +6qld_f    
                           +-7 
  RG----                   ! !   +-----------8txv_G    
                           ! +---5 
  RT----           +-------8     +-----------8hr1_E    
                   !       ! 
  RA----           !       !                 +7xsx_a    
                   !       +-----------------3 
  RT----           !                         +8grq_A    
               +--10  
  RA----       !   !                        +1zla_C    
               !   !          +-------------4 
  RA--RA       !   !          !             +6a5l_g    
               !   !  +-------6 
  RT----     -11   !  !       !              +8u14_G    
               !   +--9       +--------------1 
  RG----       !      !                      +8ox0_C    
               !      ! 
  RG----       !      +----------------------8jla_C    
               !  
  RG----       +-----------------------------5x0y_G

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updated Wed Dec 18 01:01:03 2024